C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cysteine-serine-rich nuclear protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000178662 CSRNP3 9606 + 2:165469647-165689407 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314499 CSRNP3-201 165469647-165689407 protein_coding
  ENST00000342316 CSRNP3-001 165572339-165689407 protein_coding
  ENST00000409420 CSRNP3-006 165574109-165680194 protein_coding
  ENST00000409664 CSRNP3-002 165469698-165676319 protein_coding
  ENST00000421875 CSRNP3-003 165469647-165679307 protein_coding
  ENST00000464503 CSRNP3-005 165469706-165566981 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314499ENST00000342316ENST00000409420ENST00000421875
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314499 0.223±0.00 2.366±0.35 0.055±0.00 0.265±0.00 0.301±0.09 0.576±0.00 N/A N/A 0.013±0.01 0.182±0.00 N/A 0.206±0.03
ENST00000342316 N/A 11.467±0.00 0.407±0.00 N/A 0.092±0.00 N/A 1.820±0.00 N/A 0.003±0.00 0.234±0.00 0.035±0.01 N/A
ENST00000409420 N/A N/A N/A 0.338±0.00 0.404±0.00 N/A N/A N/A N/A 1.122±0.00 0.040±0.00 0.165±0.00
ENST00000421875 N/A N/A N/A N/A N/A N/A 1.786±0.00 0.188±0.00 0.053±0.00 0.125±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CJ CIL_0006CJ_0001 CGP 2:165239402-165689407
CIL_00087V CIL_00087V_0001 VISTA 2:165345029-165948304
CIL_0003S2 CIL_0003S2_0002 CGP 2:165469647-165794682

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0010923 IDA negative regulation of phosphatase activity
GO:0043065 ISS positive regulation of apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079741 CSRNP3 cysteine-serine-rich nuclear protein 3 protein_coding Danio_rerio
ENSMUSG00000044647 Csrnp3 cysteine-serine-rich nuclear protein 3 protein_coding Mus_musculus

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