C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cysteine-serine-rich nuclear protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314499 CSRNP3-201 ENSG00000178662 9606 + 2:165469647-165689407 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyMuscleOvaryTestisENST00000314499
Transcript ID Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Testis
ENST00000314499 0.223±0.00 2.366±0.35 0.055±0.00 0.265±0.00 0.301±0.09 0.576±0.00 0.013±0.01 0.182±0.00 0.206±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CJ CIL_0006CJ_0001 CGP 2:165239402-165689407
CIL_00087V CIL_00087V_0001 VISTA 2:165345029-165948304
CIL_0003S2 CIL_0003S2_0002 CGP 2:165469647-165794682

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0010923 IDA negative regulation of phosphatase activity
GO:0043065 ISS positive regulation of apoptotic process
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122912 Csrnp3-001 protein_coding Mus_musculus 0 3081
ENSMUST00000053910 Csrnp3-002 protein_coding Mus_musculus 0 2883
ENSMUST00000176109 Csrnp3-007 protein_coding Mus_musculus 0 2809
ENSMUST00000145598 Csrnp3-008 protein_coding Mus_musculus 0 2372
ENSMUST00000112394 Csrnp3-004 protein_coding Mus_musculus 0 1964
ENSMUST00000112397 Csrnp3-005 nonsense_mediated_decay Mus_musculus 0 1628

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