C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cysteine-serine-rich nuclear protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044647 Csrnp3 10090 + 2:65845767-66031546 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053910 Csrnp3-002 65845842-66025606 protein_coding
  ENSMUST00000112394 Csrnp3-004 65948949-66023053 protein_coding
  ENSMUST00000112397 Csrnp3-005 65845855-66023279 nonsense_mediated_decay
  ENSMUST00000122912 Csrnp3-001 65845767-66031546 protein_coding
  ENSMUST00000129133 Csrnp3-006 65860597-65949439 retained_intron
  ENSMUST00000139896 Csrnp3-003 65845845-65878818 retained_intron
  ENSMUST00000145598 Csrnp3-008 65931865-66023484 protein_coding
  ENSMUST00000176109 Csrnp3-007 65930137-66023946 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053910ENSMUST00000112394ENSMUST00000112397ENSMUST00000122912ENSMUST00000129133ENSMUST00000145598ENSMUST00000176109
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053910 N/A N/A N/A N/A 0.035±0.00 N/A 0.009±0.00 N/A 0.012±0.00 N/A N/A N/A N/A N/A
ENSMUST00000112394 0.954±0.19 0.107±0.10 N/A 21.630±0.00 N/A N/A N/A 0.306±0.09 0.050±0.00 N/A N/A 1.305±0.30 0.065±0.01 N/A
ENSMUST00000112397 N/A 0.074±0.06 N/A N/A N/A 0.041±0.00 0.066±0.00 N/A N/A N/A N/A N/A N/A 5.254±1.20
ENSMUST00000122912 0.173±0.12 0.024±0.01 0.006±0.00 2.026±0.64 0.010±0.00 0.035±0.01 0.012±0.00 N/A 0.009±0.00 0.016±0.01 0.002±0.00 0.560±0.11 0.002±0.00 N/A
ENSMUST00000129133 N/A 0.249±0.00 N/A N/A N/A N/A 0.192±0.00 N/A 0.173±0.00 N/A N/A N/A N/A N/A
ENSMUST00000145598 N/A N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.667±0.15
ENSMUST00000176109 N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A 0.372±0.15 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CJ CIL_0006CJ_0002 CGP 2:65620857-66031546
CIL_00087V CIL_00087V_0002 VISTA 2:65692128-66294633
CIL_0003S2 CIL_0003S2_0003 CGP 2:65845767-66124994

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0010923 ISS negative regulation of phosphatase activity
GO:0043065 IDA positive regulation of apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079741 CSRNP3 cysteine-serine-rich nuclear protein 3 protein_coding Danio_rerio
ENSG00000178662 CSRNP3 cysteine-serine-rich nuclear protein 3 protein_coding Homo_sapiens

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