C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006CJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136531-ENSG00000178662 CGP 9606 2:165239402-165689407
GeneTranscriptPositionBiotype
ENSG00000136531 (SCN2A)
sodium channel, voltage-gated, type II, alpha subunit 		ENST00000283256 (SCN2A-001) 165294031-165392053 protein_coding
ENST00000375427 (SCN2A-002) 165295773-165390029 protein_coding
ENST00000375437 (SCN2A-201) 165239402-165392308 protein_coding
ENST00000424833 (SCN2A-003) 165239402-165315598 protein_coding
ENST00000480032 (SCN2A-005) 165294044-165381003 retained_intron
ENST00000486878 (SCN2A-004) 165308666-165310745 retained_intron
ENSG00000178662 (CSRNP3)
cysteine-serine-rich nuclear protein 3 		ENST00000314499 (CSRNP3-201) 165469647-165689407 protein_coding
ENST00000342316 (CSRNP3-001) 165572339-165689407 protein_coding
ENST00000409420 (CSRNP3-006) 165574109-165680194 protein_coding
ENST00000409664 (CSRNP3-002) 165469698-165676319 protein_coding
ENST00000421875 (CSRNP3-003) 165469647-165679307 protein_coding
ENST00000464503 (CSRNP3-005) 165469706-165566981 processed_transcript
ENSG00000233204 (MAPRE1P3)
MAPRE1 pseudogene 3 		ENST00000435438 (MAPRE1P3-001) 165285253-165286048 processed_pseudogene
CIL_0006CJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000075318-ENSMUSG00000044647 CGP 10090 2:65620857-66031546
GeneTranscriptPositionBiotype
ENSMUSG00000044647 (Csrnp3)
cysteine-serine-rich nuclear protein 3 		ENSMUST00000053910 (Csrnp3-002) 65845842-66025606 protein_coding
ENSMUST00000112394 (Csrnp3-004) 65948949-66023053 protein_coding
ENSMUST00000112397 (Csrnp3-005) 65845855-66023279 nonsense_mediated_decay
ENSMUST00000122912 (Csrnp3-001) 65845767-66031546 protein_coding
ENSMUST00000129133 (Csrnp3-006) 65860597-65949439 retained_intron
ENSMUST00000139896 (Csrnp3-003) 65845845-65878818 retained_intron
ENSMUST00000145598 (Csrnp3-008) 65931865-66023484 protein_coding
ENSMUST00000176109 (Csrnp3-007) 65930137-66023946 protein_coding
ENSMUSG00000075318 (Scn2a1)
sodium channel, voltage-gated, type II, alpha 1 		ENSMUST00000028377 (Scn2a1-001) 65620857-65767447 protein_coding
ENSMUST00000100067 (Scn2a1-201) 65670445-65767447 protein_coding
ENSMUST00000138368 (Scn2a1-003) 65682280-65683866 processed_transcript
ENSMUST00000144254 (Scn2a1-002) 65681048-65683872 protein_coding
ENSMUSG00000085160 (Gm13617)
predicted gene 13617 		ENSMUST00000155350 (Gm13617-001) 65944299-65954070 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CJ_0001ENSG00000136531ENST00000283256ENST00000375427ENST00000375437ENST00000424833ENST00000480032ENST00000486878ENSG00000178662ENST00000314499ENST00000342316ENST00000409420ENST00000409664ENST00000421875ENST00000464503ENSG00000233204ENST00000435438CIL_0006CJ_0002ENSMUSG00000044647ENSMUST00000053910ENSMUST00000112394ENSMUST00000112397ENSMUST00000122912ENSMUST00000129133ENSMUST00000139896ENSMUST00000145598ENSMUST00000176109ENSMUSG00000075318ENSMUST00000028377ENSMUST00000100067ENSMUST00000138368ENSMUST00000144254ENSMUSG00000085160ENSMUST00000155350
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CJ_0001ENSG00000136531ENST00000283256ENST00000375427ENST00000375437ENST00000424833ENST00000480032ENST00000486878ENSG00000178662ENST00000314499ENST00000342316ENST00000409420ENST00000421875ENSG00000233204ENST00000435438CIL_0006CJ_0002ENSMUSG00000044647ENSMUST00000053910ENSMUST00000112394ENSMUST00000112397ENSMUST00000122912ENSMUST00000129133ENSMUST00000145598ENSMUST00000176109ENSMUSG00000075318ENSMUST00000028377ENSMUST00000100067ENSMUST00000138368ENSMUST00000144254ENSMUSG00000085160ENSMUST00000155350
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136531 ENST00000283256 0.004±0.00 0.037±0.00 N/A 12.338±6.01 0.110±0.05 0.048±0.02 0.018±0.00 0.857±0.00 0.089±0.00 0.039±0.01 0.016±0.00 0.380±0.22 0.019±0.00 0.146±0.09
ENST00000375427 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A 0.026±0.00 N/A 0.214±0.00 N/A 0.230±0.00
ENST00000375437 N/A N/A N/A 6.533±1.08 N/A N/A N/A 0.272±0.00 N/A N/A N/A 0.070±0.03 0.067±0.00 0.060±0.00
ENST00000424833 N/A N/A N/A N/A N/A N/A 0.066±0.05 0.289±0.00 N/A N/A N/A N/A N/A N/A
ENST00000480032 N/A N/A N/A N/A 0.078±0.00 N/A 0.030±0.00 N/A 0.034±0.00 N/A N/A 0.155±0.00 0.012±0.00 N/A
ENST00000486878 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A
ENSG00000178662 ENST00000314499 N/A 0.223±0.00 N/A 2.366±0.35 0.055±0.00 0.265±0.00 0.301±0.09 0.576±0.00 N/A N/A 0.013±0.01 0.182±0.00 N/A 0.206±0.03
ENST00000342316 N/A N/A N/A 11.467±0.00 0.407±0.00 N/A 0.092±0.00 N/A 1.820±0.00 N/A 0.003±0.00 0.234±0.00 0.035±0.01 N/A
ENST00000409420 N/A N/A N/A N/A N/A 0.338±0.00 0.404±0.00 N/A N/A N/A N/A 1.122±0.00 0.040±0.00 0.165±0.00
ENST00000409664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421875 N/A N/A N/A N/A N/A N/A N/A N/A 1.786±0.00 0.188±0.00 0.053±0.00 0.125±0.00 N/A N/A
ENST00000464503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233204 ENST00000435438 N/A N/A 0.675±0.00 N/A N/A N/A N/A 0.386±0.00 N/A N/A N/A 0.224±0.19 N/A 0.031±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000044647 ENSMUST00000053910 N/A N/A N/A N/A 0.035±0.00 N/A 0.009±0.00 N/A 0.012±0.00 N/A N/A N/A N/A N/A
ENSMUST00000112394 0.954±0.19 0.107±0.10 N/A 21.630±0.00 N/A N/A N/A 0.306±0.09 0.050±0.00 N/A N/A 1.305±0.30 0.065±0.01 N/A
ENSMUST00000112397 N/A 0.074±0.06 N/A N/A N/A 0.041±0.00 0.066±0.00 N/A N/A N/A N/A N/A N/A 5.254±1.20
ENSMUST00000122912 0.173±0.12 0.024±0.01 0.006±0.00 2.026±0.64 0.010±0.00 0.035±0.01 0.012±0.00 N/A 0.009±0.00 0.016±0.01 0.002±0.00 0.560±0.11 0.002±0.00 N/A
ENSMUST00000129133 N/A 0.249±0.00 N/A N/A N/A N/A 0.192±0.00 N/A 0.173±0.00 N/A N/A N/A N/A N/A
ENSMUST00000139896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145598 N/A N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.667±0.15
ENSMUST00000176109 N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A N/A N/A N/A 0.372±0.15 N/A N/A
ENSMUSG00000075318 ENSMUST00000028377 0.134±0.00 N/A N/A 2.736±1.16 0.165±0.06 0.181±0.02 0.075±0.00 N/A 0.016±0.01 N/A N/A 0.286±0.03 N/A 0.127±0.02
ENSMUST00000100067 0.074±0.00 0.079±0.02 0.403±0.00 7.564±4.52 0.126±0.04 N/A N/A 0.046±0.00 0.021±0.01 N/A 0.105±0.01 0.143±0.08 0.021±0.01 0.020±0.00
ENSMUST00000138368 N/A 0.312±0.00 N/A N/A N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A
ENSMUST00000144254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.226±0.13 N/A
ENSMUSG00000085160 ENSMUST00000155350 N/A N/A N/A 0.103±0.02 N/A N/A 0.081±0.03 0.069±0.00 N/A N/A N/A N/A N/A N/A

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