C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phenylalanyl-tRNA synthetase, alpha subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000179115 FARSA 9606 - 19:12922479-12934037 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314606 FARSA-001 12922480-12933715 protein_coding
  ENST00000423140 FARSA-002 12922480-12933714 protein_coding
  ENST00000586146 FARSA-004 12922530-12933696 nonsense_mediated_decay
  ENST00000586280 FARSA-009 12928410-12933642 retained_intron
  ENST00000587488 FARSA-010 12922545-12928439 protein_coding
  ENST00000587981 FARSA-007 12930307-12933711 protein_coding
  ENST00000588025 FARSA-006 12922479-12934037 protein_coding
  ENST00000588965 FARSA-003 12922540-12933696 retained_intron
  ENST00000592662 FARSA-008 12928398-12933698 retained_intron
  ENST00000593021 FARSA-005 12924151-12933680 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314606ENST00000423140ENST00000586146ENST00000587488ENST00000587981ENST00000588025ENST00000588965ENST00000592662ENST00000593021
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314606 6.311±0.00 29.348±0.00 2.798±0.00 16.474±4.84 9.486±4.89 8.342±2.03 3.298±1.47 10.460±6.31 9.327±6.83 4.441±2.64 21.711±0.00 23.299±15.85 27.940±6.30 16.227±4.48
ENST00000423140 N/A N/A N/A N/A 1.791±0.00 N/A 3.366±0.00 N/A 7.375±0.00 6.078±0.00 4.859±4.19 N/A N/A N/A
ENST00000586146 10.454±0.00 N/A N/A 10.115±0.00 3.875±0.00 7.795±0.00 1.744±0.97 9.200±0.00 1.107±0.00 N/A 6.183±0.00 1.411±0.00 N/A 6.230±0.00
ENST00000587488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.877±0.00 N/A N/A
ENST00000587981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.482±0.00 N/A N/A N/A
ENST00000588025 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.137±0.00 N/A N/A
ENST00000588965 N/A N/A N/A N/A N/A 3.122±0.00 N/A N/A N/A 0.599±0.00 N/A N/A N/A N/A
ENST00000592662 N/A N/A 1.020±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593021 8.522±0.00 N/A N/A 17.736±0.00 5.632±0.00 N/A 2.686±1.81 8.192±0.00 1.684±0.00 N/A 4.461±3.81 8.590±0.00 11.178±0.00 7.527±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0000166 IEA nucleotide binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004826 IEA phenylalanine-tRNA ligase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 TAS:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006432 IEA phenylalanyl-tRNA aminoacylation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0043039 IEA tRNA aminoacylation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032750 farsa phenylalanyl-tRNA synthetase, alpha subunit protein_coding Danio_rerio
ENSMUSG00000003808 Farsa phenylalanyl-tRNA synthetase, alpha subunit protein_coding Mus_musculus

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