C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phenylalanyl-tRNA synthetase, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314606 FARSA-001 ENSG00000179115 9606 - 19:12922480-12933715 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314606
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314606 6.311±0.00 29.348±0.00 2.798±0.00 16.474±4.84 9.486±4.89 8.342±2.03 3.298±1.47 10.460±6.31 9.327±6.83 4.441±2.64 21.711±0.00 23.299±15.85 27.940±6.30 16.227±4.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0000166 IEA nucleotide binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004826 IEA phenylalanine-tRNA ligase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 TAS:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006432 IEA phenylalanyl-tRNA aminoacylation
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0043039 IEA tRNA aminoacylation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003906 Farsa-001 protein_coding Mus_musculus 0 1637
ENSMUST00000109754 Farsa-002 protein_coding Mus_musculus 0 1616
ENSMUST00000156970 Farsa-003 nonsense_mediated_decay Mus_musculus 0 1349
ENSMUST00000129595 Farsa-005 retained_intron Mus_musculus 0 1109
ENSMUST00000144404 Farsa-004 retained_intron Mus_musculus 0 894
ENSMUST00000141480 Farsa-006 retained_intron Mus_musculus 0 252

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