C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phenylalanyl-tRNA synthetase, alpha subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000003808 Farsa 10090 + 8:84856989-84869257 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000003906 Farsa-001 84856989-84869257 protein_coding
  ENSMUST00000109754 Farsa-002 84857017-84869257 protein_coding
  ENSMUST00000129595 Farsa-005 84856995-84869256 retained_intron
  ENSMUST00000141480 Farsa-006 84867563-84869010 retained_intron
  ENSMUST00000144404 Farsa-004 84857009-84867026 retained_intron
  ENSMUST00000156970 Farsa-003 84857020-84869256 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000003906ENSMUST00000109754ENSMUST00000129595ENSMUST00000141480ENSMUST00000144404ENSMUST00000156970
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000003906 9.483±1.28 16.714±1.80 10.222±3.48 20.341±11.11 7.919±0.69 9.511±3.11 6.970±1.54 10.149±2.19 21.535±14.85 8.578±0.30 8.637±1.35 17.914±6.59 24.559±9.76 12.476±2.10
ENSMUST00000109754 N/A N/A N/A 4.974±0.00 N/A N/A N/A N/A N/A N/A N/A 23.572±0.00 21.045±6.72 10.473±5.46
ENSMUST00000129595 5.228±1.71 9.283±0.89 4.478±0.64 7.658±1.72 6.990±1.31 6.064±0.88 1.902±0.24 3.535±0.50 5.304±2.49 4.855±0.87 2.401±0.51 8.589±2.37 6.494±1.10 4.436±0.00
ENSMUST00000141480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.791±0.00 N/A
ENSMUST00000144404 3.189±0.03 N/A 1.833±0.18 4.533±0.48 2.743±0.77 1.633±0.00 1.139±0.15 N/A 1.308±0.00 2.388±0.08 0.796±0.06 N/A N/A N/A
ENSMUST00000156970 9.070±2.34 4.366±0.00 3.629±0.20 6.827±2.52 9.172±4.74 3.522±0.12 3.709±1.47 4.716±1.08 6.710±3.79 4.185±0.76 2.341±0.45 9.463±2.18 15.019±3.34 8.058±2.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230
CIL_0006LV CIL_0006LV_0002 CGP 8:84856989-84888221

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0004826 IEA phenylalanine-tRNA ligase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006432 IEA phenylalanyl-tRNA aminoacylation
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032750 farsa phenylalanyl-tRNA synthetase, alpha subunit protein_coding Danio_rerio
ENSG00000179115 FARSA phenylalanyl-tRNA synthetase, alpha subunit protein_coding Homo_sapiens

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