C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phenylalanyl-tRNA synthetase, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000586146 FARSA-004 ENSG00000179115 9606 - 19:12922530-12933696 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryTestisENST00000586146
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000586146 10.454±0.00 10.115±0.00 3.875±0.00 7.795±0.00 1.744±0.97 9.200±0.00 1.107±0.00 6.183±0.00 1.411±0.00 6.230±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156970 Farsa-003 nonsense_mediated_decay Mus_musculus 0 876
ENSMUST00000003906 Farsa-001 protein_coding Mus_musculus 0 876
ENSMUST00000109754 Farsa-002 protein_coding Mus_musculus 0 856
ENSMUST00000144404 Farsa-004 retained_intron Mus_musculus 0 704
ENSMUST00000129595 Farsa-005 retained_intron Mus_musculus 0 704
ENSMUST00000141480 Farsa-006 retained_intron Mus_musculus 0 252

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