C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phenylalanyl-tRNA synthetase, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000593021 FARSA-005 ENSG00000179115 9606 - 19:12924151-12933680 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000593021
Transcript ID Adipose Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000593021 8.522±0.00 17.736±0.00 5.632±0.00 2.686±1.81 8.192±0.00 1.684±0.00 4.461±3.81 8.590±0.00 11.178±0.00 7.527±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VV CIL_0007VV_0001 VISTA 19:12752697-13356541
CIL_0007ZV CIL_0007ZV_0001 VISTA 19:12767682-13372012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0000166 IEA nucleotide binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004826 IEA phenylalanine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0006418 IEA tRNA aminoacylation for protein translation
GO:0006432 IEA phenylalanyl-tRNA aminoacylation
GO:0043039 IEA tRNA aminoacylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000156970 Farsa-003 nonsense_mediated_decay Mus_musculus 0 1070
ENSMUST00000003906 Farsa-001 protein_coding Mus_musculus 0 1070
ENSMUST00000109754 Farsa-002 protein_coding Mus_musculus 0 1050
ENSMUST00000129595 Farsa-005 retained_intron Mus_musculus 0 678
ENSMUST00000144404 Farsa-004 retained_intron Mus_musculus 0 464

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