C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coatomer protein complex, subunit gamma 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000181789 COPG1 9606 + 3:129249606-129277773 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314797 COPG1-001 129249606-129277773 protein_coding
  ENST00000504350 COPG1-005 129249653-129255040 nonsense_mediated_decay
  ENST00000504547 COPG1-015 129260227-129265675 retained_intron
  ENST00000509208 COPG1-014 129254327-129255039 retained_intron
  ENST00000509889 COPG1-008 129265752-129277457 protein_coding
  ENST00000512034 COPG1-013 129272853-129275183 retained_intron
  ENST00000513410 COPG1-009 129263911-129267235 retained_intron
  ENST00000513965 COPG1-004 129249627-129253098 retained_intron
  ENST00000514478 COPG1-006 129272296-129277498 nonsense_mediated_decay
  ENST00000515725 COPG1-002 129249632-129277771 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314797ENST00000504547ENST00000509889
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314797 46.742±0.00 29.711±0.00 6.064±0.00 23.797±10.36 28.782±15.78 14.573±5.24 13.502±7.54 29.801±23.10 23.597±17.14 21.273±11.11 26.484±20.68 29.951±18.04 45.644±16.11 18.018±0.80
ENST00000504547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 47.184±0.00
ENST00000509889 N/A 30.696±0.00 5.009±0.00 26.241±12.31 28.889±4.76 20.052±0.00 5.627±0.00 26.471±14.00 24.730±16.78 N/A 5.341±0.00 47.380±40.68 120.216±0.00 50.234±20.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000312 CIL_000312_0001 CGP 3:129169484-129277773
CIL_00030Z CIL_00030Z_0001 CGP 3:129249606-129306186

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0005198 IEA structural molecule activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030126 ISS:IEA COPI vesicle coat
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0051683 ISS establishment of Golgi localization
GO:0061024 TAS membrane organization
GO:0072384 ISS organelle transport along microtubule

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000030058 Copg1 coatomer protein complex, subunit gamma 1 protein_coding Mus_musculus

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