C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coatomer protein complex, subunit gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314797 COPG1-001 ENSG00000181789 9606 + 3:129249606-129277773 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314797
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314797 46.742±0.00 29.711±0.00 6.064±0.00 23.797±10.36 28.782±15.78 14.573±5.24 13.502±7.54 29.801±23.10 23.597±17.14 21.273±11.11 26.484±20.68 29.951±18.04 45.644±16.11 18.018±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000312 CIL_000312_0001 CGP 3:129169484-129277773
CIL_00030Z CIL_00030Z_0001 CGP 3:129249606-129306186

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0005198 IEA structural molecule activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005829 TAS cytosol
GO:0006886 IEA intracellular protein transport
GO:0006890 TAS retrograde vesicle-mediated transport, Golgi to ER
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030126 ISS:IEA COPI vesicle coat
GO:0048205 TAS COPI coating of Golgi vesicle
GO:0051683 ISS establishment of Golgi localization
GO:0061024 TAS membrane organization
GO:0072384 ISS organelle transport along microtubule

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113607 Copg1-001 protein_coding Mus_musculus 0 3280
ENSDART00000043660 copg2-001 protein_coding Danio_rerio 0 1258
ENSMUST00000149409 Copg1-006 retained_intron Mus_musculus 0 894
ENSMUST00000137717 Copg1-002 retained_intron Mus_musculus 0 656
ENSMUST00000149907 Copg1-004 retained_intron Mus_musculus 0 549
ENSMUST00000049966 Copg1-003 protein_coding Mus_musculus 0 449
ENSMUST00000132938 Copg1-007 retained_intron Mus_musculus 0 425
ENSMUST00000127614 Copg1-008 processed_transcript Mus_musculus 0 220

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