C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trinucleotide repeat containing 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182095 TNRC18 9606 - 7:5306790-5425414 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000328270 TNRC18-007 5313111-5320607 protein_coding
  ENST00000399434 TNRC18-002 5389450-5425414 protein_coding
  ENST00000399537 TNRC18-001 5306790-5423546 protein_coding
  ENST00000413081 TNRC18-010 5376114-5388029 protein_coding
  ENST00000430969 TNRC18-201 5306800-5423546 protein_coding
  ENST00000434361 TNRC18-009 5389305-5407394 protein_coding
  ENST00000440081 TNRC18-014 5352002-5362027 protein_coding
  ENST00000455076 TNRC18-013 5324222-5332878 protein_coding
  ENST00000464852 TNRC18-011 5320140-5320662 retained_intron
  ENST00000497663 TNRC18-012 5324247-5325574 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399537ENST00000430969ENST00000434361ENST00000440081
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399537 N/A N/A N/A N/A N/A 0.348±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000430969 5.247±0.00 12.253±0.00 4.839±3.79 10.493±0.00 7.556±4.79 3.229±0.00 11.606±0.00 2.900±0.94 7.885±0.00 4.140±0.00 13.059±10.92 3.277±0.04 7.141±0.11
ENST00000434361 N/A N/A N/A N/A N/A 2.345±0.00 N/A N/A N/A 1.751±0.00 N/A N/A N/A
ENST00000440081 N/A N/A N/A N/A N/A N/A 2.339±0.00 N/A N/A N/A 17.038±0.00 15.477±0.00 11.976±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M3 CIL_0002M3_0001 CGP 7:5190188-5306870
CIL_00027K CIL_00027K_0002 CGP 7:5274369-5425414
CIL_0002M4 CIL_0002M4_0001 CGP 7:5306790-5513798

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IEA chromatin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077052 tnrc18 trinucleotide repeat containing 18 protein_coding Danio_rerio
ENSMUSG00000039477 Tnrc18 trinucleotide repeat containing 18 protein_coding Mus_musculus

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