C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002M4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000182095-ENSG00000155034 CGP 9606 7:5306790-5513798
GeneTranscriptPositionBiotype
ENSG00000155034 (FBXL18)
F-box and leucine-rich repeat protein 18 		ENST00000382368 (FBXL18-003) 5480558-5513798 protein_coding
ENST00000415009 (FBXL18-002) 5431335-5513752 nonsense_mediated_decay
ENST00000453700 (FBXL18-201) 5480451-5513768 protein_coding
ENST00000458142 (FBXL18-004) 5489178-5501919 protein_coding
ENST00000620087 (FBXL18-202) 5480582-5500996 protein_coding
ENSG00000164638 (SLC29A4)
solute carrier family 29 (equilibrative nucleoside transporter), member 4 		ENST00000297195 (SLC29A4-002) 5282969-5304060 protein_coding
ENST00000396872 (SLC29A4-001) 5282930-5306870 protein_coding
ENST00000406453 (SLC29A4-003) 5283029-5304060 protein_coding
ENST00000434816 (SLC29A4-004) 5274369-5291766 protein_coding
ENST00000439491 (SLC29A4-006) 5299329-5303680 processed_transcript
ENST00000444741 (SLC29A4-005) 5282962-5291767 protein_coding
ENSG00000188365 (AC092171.2)
 ENST00000455866 (AC092171.2-001) 5419846-5423122 antisense
ENSG00000207973 (MIR589)
microRNA 589 		ENST00000385238 (MIR589-201) 5495819-5495917 miRNA
ENSG00000230733 (AC092171.4)
 ENST00000444210 (AC092171.4-001) 5475804-5479811 lincRNA
ENSG00000234432 (RP11-1275H24.1)
 ENST00000610122 (RP11-1275H24.1-001) 5426277-5428927 lincRNA
ENSG00000241269 (AC093620.5)
 ENST00000342963 (AC093620.5-001) 5419827-5420767 antisense
ENSG00000272953 (RP11-1275H24.2)
 ENST00000609130 (RP11-1275H24.2-001) 5425770-5426401 lincRNA
ENSG00000273084 (RP11-1275H24.3)
 ENST00000608012 (RP11-1275H24.3-001) 5428731-5429672 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002M4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039477-ENSMUSG00000066640 CGP 10090 5:142750380-142895421
GeneTranscriptPositionBiotype
ENSMUSG00000039477 (Tnrc18)
trinucleotide repeat containing 18 		ENSMUST00000036253 (Tnrc18-201) 142754796-142817387 protein_coding
ENSMUST00000151477 (Tnrc18-001) 142754789-142817662 protein_coding
ENSMUST00000152247 (Tnrc18-003) 142750380-142788523 protein_coding
ENSMUST00000155461 (Tnrc18-002) 142788309-142800437 processed_transcript
ENSMUSG00000066640 (Fbxl18)
F-box and leucine-rich repeat protein 18 		ENSMUST00000035985 (Fbxl18-201) 142871789-142895238 protein_coding
ENSMUST00000110766 (Fbxl18-001) 142866946-142895421 protein_coding
ENSMUST00000156725 (Fbxl18-002) 142882419-142895421 retained_intron
ENSMUSG00000082308 (Gm15770)
predicted gene 15770 		ENSMUST00000117498 (Gm15770-001) 142852616-142853199 processed_pseudogene
ENSMUSG00000097559 (D430018E03Rik)
RIKEN cDNA D430018E03 gene 		ENSMUST00000181842 (D430018E03Rik-201) 142874077-142878373 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002M4_0001ENSG00000155034ENST00000382368ENST00000415009ENST00000453700ENST00000458142ENST00000620087ENSG00000164638ENST00000297195ENST00000396872ENST00000406453ENST00000434816ENST00000439491ENST00000444741ENSG00000188365ENST00000455866ENSG00000207973ENST00000385238ENSG00000230733ENST00000444210ENSG00000234432ENST00000610122ENSG00000241269ENST00000342963ENSG00000272953ENST00000609130ENSG00000273084ENST00000608012CIL_0002M4_0002ENSMUSG00000039477ENSMUST00000036253ENSMUST00000151477ENSMUST00000152247ENSMUST00000155461ENSMUSG00000066640ENSMUST00000035985ENSMUST00000110766ENSMUST00000156725ENSMUSG00000082308ENSMUST00000117498ENSMUSG00000097559ENSMUST00000181842
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002M4_0001ENSG00000155034ENST00000382368ENST00000415009ENST00000453700ENST00000458142ENST00000620087ENSG00000164638ENST00000297195ENST00000406453ENSG00000188365ENST00000455866ENSG00000207973ENST00000385238ENSG00000230733ENST00000444210ENSG00000234432ENST00000610122ENSG00000241269ENST00000342963ENSG00000272953ENST00000609130ENSG00000273084ENST00000608012CIL_0002M4_0002ENSMUSG00000039477ENSMUST00000036253ENSMUST00000151477ENSMUST00000152247ENSMUSG00000066640ENSMUST00000035985ENSMUST00000110766ENSMUST00000156725ENSMUSG00000082308ENSMUST00000117498ENSMUSG00000097559ENSMUST00000181842
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155034 ENST00000382368 0.595±0.00 0.411±0.00 0.092±0.00 1.291±0.00 N/A 0.574±0.00 0.655±0.00 1.446±0.00 0.260±0.00 N/A 0.597±0.00 0.655±0.41 1.243±0.40 0.844±0.12
ENST00000415009 0.799±0.00 1.013±0.00 N/A N/A N/A N/A N/A N/A 0.270±0.00 0.259±0.00 0.463±0.00 N/A N/A 0.309±0.00
ENST00000453700 N/A 0.583±0.00 0.148±0.00 0.698±0.00 N/A 0.665±0.00 0.021±0.00 0.250±0.00 0.191±0.01 0.459±0.00 N/A 0.069±0.00 N/A N/A
ENST00000458142 N/A N/A 0.066±0.00 N/A 0.380±0.00 0.442±0.00 N/A N/A 0.249±0.00 0.394±0.14 N/A N/A 0.175±0.03 1.357±0.00
ENST00000620087 0.405±0.00 N/A N/A 0.767±0.00 N/A 0.473±0.00 N/A N/A 0.891±0.00 0.158±0.00 N/A 0.529±0.00 N/A 0.531±0.00
ENSG00000164638 ENST00000297195 N/A N/A N/A 1.691±0.00 59.374±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000406453 N/A N/A N/A N/A 35.472±0.00 N/A N/A N/A N/A N/A 0.729±0.00 N/A N/A N/A
ENST00000434816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439491 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188365 ENST00000455866 0.065±0.00 0.380±0.00 0.334±0.00 0.150±0.01 0.411±0.31 0.063±0.00 0.094±0.03 N/A 0.606±0.00 0.319±0.00 N/A 0.249±0.12 0.099±0.00 0.420±0.00
ENSG00000207973 ENST00000385238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.347±0.00 N/A N/A
ENSG00000230733 ENST00000444210 0.502±0.00 1.353±0.00 0.346±0.00 1.763±1.20 1.731±1.29 1.052±0.77 0.383±0.26 2.186±0.00 0.871±0.57 0.383±0.29 0.223±0.00 1.963±1.07 1.237±0.19 1.406±0.15
ENSG00000234432 ENST00000610122 0.278±0.00 0.214±0.00 0.107±0.00 0.114±0.00 0.100±0.01 0.189±0.10 0.142±0.02 0.110±0.00 0.111±0.01 0.240±0.00 0.250±0.17 0.463±0.29 0.134±0.07 0.146±0.03
ENSG00000241269 ENST00000342963 0.068±0.00 0.488±0.00 N/A 0.200±0.00 0.962±0.27 0.384±0.07 N/A N/A 0.806±0.00 N/A N/A 0.198±0.09 0.178±0.00 0.384±0.27
ENSG00000272953 ENST00000609130 N/A N/A N/A 0.998±0.00 N/A N/A N/A 1.100±0.00 0.572±0.38 N/A N/A 0.623±0.15 0.514±0.00 0.430±0.00
ENSG00000273084 ENST00000608012 N/A N/A N/A 0.822±0.00 0.912±0.43 0.383±0.00 0.362±0.00 0.833±0.00 0.318±0.09 0.692±0.00 0.854±0.00 1.315±0.40 0.378±0.05 0.260±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039477 ENSMUST00000036253 1.458±0.63 5.185±2.57 N/A 7.372±3.49 1.493±0.26 2.971±1.55 0.447±0.01 1.482±0.69 0.513±0.22 1.726±0.00 N/A 3.175±0.92 N/A 1.395±0.51
ENSMUST00000151477 1.259±0.15 1.794±0.00 N/A 4.215±0.25 4.783±0.00 N/A N/A 2.117±0.57 0.301±0.09 N/A N/A 7.103±0.00 3.218±2.53 1.155±0.29
ENSMUST00000152247 1.197±0.43 N/A N/A N/A 1.864±0.00 N/A 0.686±0.00 1.529±0.55 0.710±0.23 1.633±0.00 N/A 6.892±4.21 9.972±0.00 N/A
ENSMUST00000155461 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000066640 ENSMUST00000035985 2.472±0.48 7.301±1.50 N/A 3.636±0.08 5.201±1.14 5.909±1.12 1.299±0.34 2.013±0.27 1.043±0.38 3.488±0.72 0.973±0.21 9.009±1.72 3.248±1.04 2.707±0.46
ENSMUST00000110766 3.597±0.96 5.346±1.07 2.494±0.19 5.533±1.79 3.138±1.45 4.193±1.47 1.035±0.46 3.703±0.36 1.622±0.85 3.472±0.95 1.088±0.54 6.634±3.24 1.462±0.37 0.696±0.15
ENSMUST00000156725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00
ENSMUSG00000082308 ENSMUST00000117498 0.064±0.00 0.191±0.13 0.130±0.00 0.056±0.04 0.086±0.00 0.095±0.00 N/A 0.133±0.07 0.068±0.01 N/A N/A 0.177±0.02 0.114±0.08 0.063±0.00
ENSMUSG00000097559 ENSMUST00000181842 0.212±0.14 0.499±0.06 0.226±0.00 0.184±0.12 0.363±0.12 0.596±0.05 0.116±0.03 0.185±0.06 0.102±0.06 0.436±0.03 0.049±0.04 0.754±0.22 0.157±0.07 0.186±0.08

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