C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trinucleotide repeat containing 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039477 Tnrc18 10090 - 5:142750380-142817662 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036253 Tnrc18-201 142754796-142817387 protein_coding
  ENSMUST00000151477 Tnrc18-001 142754789-142817662 protein_coding
  ENSMUST00000152247 Tnrc18-003 142750380-142788523 protein_coding
  ENSMUST00000155461 Tnrc18-002 142788309-142800437 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000036253ENSMUST00000151477ENSMUST00000152247
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000036253 1.458±0.63 5.185±2.57 7.372±3.49 1.493±0.26 2.971±1.55 0.447±0.01 1.482±0.69 0.513±0.22 1.726±0.00 3.175±0.92 N/A 1.395±0.51
ENSMUST00000151477 1.259±0.15 1.794±0.00 4.215±0.25 4.783±0.00 N/A N/A 2.117±0.57 0.301±0.09 N/A 7.103±0.00 3.218±2.53 1.155±0.29
ENSMUST00000152247 1.197±0.43 N/A N/A 1.864±0.00 N/A 0.686±0.00 1.529±0.55 0.710±0.23 1.633±0.00 6.892±4.21 9.972±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0002 VISTA 5:142700569-143309825
CIL_00027K CIL_00027K_0003 CGP 5:142702101-142817662
CIL_0002M4 CIL_0002M4_0002 CGP 5:142750380-142895421

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003682 IEA chromatin binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077052 tnrc18 trinucleotide repeat containing 18 protein_coding Danio_rerio
ENSG00000182095 TNRC18 trinucleotide repeat containing 18 protein_coding Homo_sapiens

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