C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000430969 TNRC18-201 ENSG00000182095 9606 - 7:5306800-5423546 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000430969
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000430969 5.247±0.00 12.253±0.00 4.839±3.79 10.493±0.00 7.556±4.79 3.229±0.00 11.606±0.00 2.900±0.94 7.885±0.00 4.140±0.00 13.059±10.92 3.277±0.04 7.141±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M3 CIL_0002M3_0001 CGP 7:5190188-5306870
CIL_00027K CIL_00027K_0002 CGP 7:5274369-5425414
CIL_0002M4 CIL_0002M4_0001 CGP 7:5306790-5513798

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IEA chromatin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000151477 Tnrc18-001 protein_coding Mus_musculus 0 3954
ENSMUST00000036253 Tnrc18-201 protein_coding Mus_musculus 0 3936
ENSMUST00000152247 Tnrc18-003 protein_coding Mus_musculus 0 3932
ENSMUST00000155461 Tnrc18-002 processed_transcript Mus_musculus 0 305

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