C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synemin, intermediate filament protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182253 SYNM 9606 + 15:99098217-99135593 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000328642 SYNM-004 99105080-99135583 protein_coding
  ENST00000336292 SYNM-001 99105035-99135589 protein_coding
  ENST00000560674 SYNM-003 99098217-99135593 protein_coding
  ENST00000594047 SYNM-002 99105080-99135583 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328642ENST00000336292ENST00000560674ENST00000594047
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328642 9.447±0.00 30.196±0.00 0.442±0.00 10.578±5.58 28.263±8.01 111.313±87.25 32.492±19.99 1.584±1.37 59.034±58.64 7.150±3.63 86.141±29.37 3.222±1.51 5.018±0.99 14.453±11.24
ENST00000336292 7.182±0.00 20.480±0.00 N/A 5.626±4.34 11.266±2.54 40.321±27.72 13.172±11.21 1.165±0.74 30.839±30.55 4.687±3.28 15.525±0.00 1.095±0.66 1.947±0.56 5.991±5.18
ENST00000560674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.036±0.00 N/A N/A N/A
ENST00000594047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 23.432±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CO CIL_0009CO_0001 VISTA 15:98550452-99154111

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005882 IEA intermediate filament
GO:0005912 IDA adherens junction
GO:0008307 IDA structural constituent of muscle
GO:0016020 IEA membrane
GO:0017166 IDA vinculin binding
GO:0019215 ISS intermediate filament binding
GO:0043034 IDA costamere
GO:0045104 TAS intermediate filament cytoskeleton organization
GO:0060053 TAS neurofilament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062350 synm synemin, intermediate filament protein protein_coding Danio_rerio
ENSMUSG00000030554 Synm synemin, intermediate filament protein protein_coding Mus_musculus

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