C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synemin, intermediate filament protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030554 Synm 10090 - 7:67730161-67759742 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051389 Synm-201 67730161-67759742 protein_coding
  ENSMUST00000074233 Synm-202 67730161-67759742 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000051389ENSMUST00000074233
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000051389 2.863±1.59 1.075±0.31 105.335±13.22 3.547±2.67 5.763±4.98 15.536±4.01 0.995±0.08 0.426±0.08 0.050±0.03 5.764±0.74 91.034±39.47 5.329±2.95 0.560±0.84 1.551±0.43
ENSMUST00000074233 1.587±0.61 1.029±0.15 36.855±8.61 0.854±0.58 1.069±0.47 8.508±0.97 0.429±0.12 0.272±0.07 0.085±0.06 3.210±0.26 N/A 2.568±1.32 0.348±0.49 0.891±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073W CIL_00073W_0002 CGP 7:67647410-67759742
CIL_0008TF CIL_0008TF_0002 VISTA 7:67710091-68313211

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005200 ISS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005882 ISS intermediate filament
GO:0005912 ISS adherens junction
GO:0008150 ND biological_process
GO:0008307 ISS structural constituent of muscle
GO:0016020 IDA membrane
GO:0017166 ISS vinculin binding
GO:0019215 IDA intermediate filament binding
GO:0043034 ISS costamere
GO:0060053 IDA neurofilament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062350 synm synemin, intermediate filament protein protein_coding Danio_rerio
ENSG00000182253 SYNM synemin, intermediate filament protein protein_coding Homo_sapiens

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