C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synemin, intermediate filament protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336292 SYNM-001 ENSG00000182253 9606 + 15:99105035-99135589 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336292
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336292 7.182±0.00 20.480±0.00 5.626±4.34 11.266±2.54 40.321±27.72 13.172±11.21 1.165±0.74 30.839±30.55 4.687±3.28 15.525±0.00 1.095±0.66 1.947±0.56 5.991±5.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CO CIL_0009CO_0001 VISTA 15:98550452-99154111

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 IDA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005882 NAS:IEA intermediate filament
GO:0005912 IDA adherens junction
GO:0008307 IDA structural constituent of muscle
GO:0016020 IEA membrane
GO:0017166 IDA vinculin binding
GO:0019215 ISS intermediate filament binding
GO:0043034 IDA costamere
GO:0045104 TAS intermediate filament cytoskeleton organization
GO:0060053 TAS neurofilament cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074233 Synm-202 protein_coding Mus_musculus 0 2702
ENSMUST00000051389 Synm-201 protein_coding Mus_musculus 0 2442

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