C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synemin, intermediate filament protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000328642 SYNM-004 ENSG00000182253 9606 + 15:99105080-99135583 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328642
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328642 9.447±0.00 30.196±0.00 0.442±0.00 10.578±5.58 28.263±8.01 111.313±87.25 32.492±19.99 1.584±1.37 59.034±58.64 7.150±3.63 86.141±29.37 3.222±1.51 5.018±0.99 14.453±11.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CO CIL_0009CO_0001 VISTA 15:98550452-99154111

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005882 IEA intermediate filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051389 Synm-201 protein_coding Mus_musculus 0 1155
ENSMUST00000074233 Synm-202 protein_coding Mus_musculus 0 1155

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