C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trafficking protein particle complex 6B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182400 TRAPPC6B 9606 - 14:39147811-39170532 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000330149 TRAPPC6B-002 39147812-39170322 protein_coding
  ENST00000347691 TRAPPC6B-001 39147812-39170393 protein_coding
  ENST00000469361 TRAPPC6B-003 39147811-39170532 retained_intron
  ENST00000554018 TRAPPC6B-006 39151797-39170329 protein_coding
  ENST00000555269 TRAPPC6B-007 39150118-39170353 nonsense_mediated_decay
  ENST00000556765 TRAPPC6B-005 39151811-39170430 nonsense_mediated_decay
  ENST00000557764 TRAPPC6B-004 39149990-39170314 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330149ENST00000347691ENST00000469361ENST00000555269ENST00000556765
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330149 4.635±0.00 3.663±0.00 N/A 11.800±1.48 3.913±1.75 2.191±1.20 3.382±0.60 2.229±1.32 3.834±1.29 2.788±0.37 2.023±0.99 5.408±2.43 4.170±2.55 10.472±2.83
ENST00000347691 0.932±0.00 N/A 1.887±0.00 N/A 2.810±0.00 1.525±0.97 N/A 2.439±0.47 N/A 2.295±0.93 0.343±0.00 1.313±0.26 0.657±0.19 N/A
ENST00000469361 N/A 0.422±0.00 1.657±0.00 N/A 0.595±0.00 N/A N/A 0.371±0.00 N/A N/A N/A 0.802±0.00 N/A N/A
ENST00000555269 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.415±0.00
ENST00000556765 N/A N/A N/A 13.605±0.00 N/A 4.379±0.00 4.642±0.00 N/A 11.127±0.00 7.099±0.00 2.175±0.00 6.525±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VX CIL_0003VX_0001 CGP 14:39114223-39170532
CIL_0003VY CIL_0003VY_0001 CGP 14:39147811-39183218

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016463 trappc6b trafficking protein particle complex 6b protein_coding Danio_rerio
ENSMUSG00000020993 Trappc6b trafficking protein particle complex 6B protein_coding Mus_musculus

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