C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: biglycan
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331595 BGN-001 ENSG00000182492 9606 + X:153494939-153509554 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331595
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331595 21.082±0.00 7.259±0.00 3.520±2.17 12.895±0.00 0.940±0.00 28.542±27.00 44.065±33.97 13.287±8.82 94.783±89.51 11.238±10.36 94.906±58.88 388.803±95.96 42.873±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011A CIL_00011A_0001 CGP X:153444720-153495516
CIL_0001V1 CIL_0001V1_0001 CGP X:153447666-153509554
CIL_0001V0 CIL_0001V0_0001 CGP X:153494939-153582939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001974 IEA blood vessel remodeling
GO:0005201 NAS extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005539 IEA glycosaminoglycan binding
GO:0005576 TAS extracellular region
GO:0005578 NAS proteinaceous extracellular matrix
GO:0005622 IEA intracellular
GO:0005796 TAS Golgi lumen
GO:0005975 TAS carbohydrate metabolic process
GO:0008150 ND biological_process
GO:0009986 IDA cell surface
GO:0019800 IEA peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan
GO:0030133 IDA transport vesicle
GO:0030198 TAS extracellular matrix organization
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0030207 TAS chondroitin sulfate catabolic process
GO:0030208 TAS dermatan sulfate biosynthetic process
GO:0031012 IDA extracellular matrix
GO:0042383 IEA sarcolemma
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0050840 IEA extracellular matrix binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033741 Bgn-001 protein_coding Mus_musculus 0 1450
ENSMUST00000169489 Bgn-201 protein_coding Mus_musculus 0 1406
ENSMUST00000133394 Bgn-005 processed_transcript Mus_musculus 0 701
ENSMUST00000155231 Bgn-006 processed_transcript Mus_musculus 0 313
ENSMUST00000140803 Bgn-002 retained_intron Mus_musculus 0 287
ENSMUST00000141945 Bgn-003 retained_intron Mus_musculus 0 287

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