C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SATB homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417717 SATB1-004 ENSG00000182568 9606 - 3:18347940-18424573 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartLiverLungMuscleTestisENST00000417717
Transcript ID Adipose Bladder Brain Breast Colon Heart Liver Lung Muscle Testis
ENST00000417717 4.003±0.00 3.649±0.00 5.418±0.26 5.889±1.16 4.574±0.60 5.994±3.21 3.975±3.12 3.997±1.74 9.612±3.39 2.561±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HQ CIL_0004HQ_0001 CGP 3:17157162-18445588
CIL_0007OK CIL_0007OK_0001 UCNEbase 3:17286171-18992888
CIL_000816 CIL_000816_0001 VISTA 3:17827870-18428745
CIL_0004HR CIL_0004HR_0001 CGP 3:18345387-19535646

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000785 IEA chromatin
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003690 TAS double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005720 IEA nuclear heterochromatin
GO:0006325 TAS chromatin organization
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0008544 IEA epidermis development
GO:0016032 IEA viral process
GO:0016363 IEA nuclear matrix
GO:0016571 IEA histone methylation
GO:0016605 IDA PML body
GO:0042110 IEA T cell activation
GO:0043367 IEA CD4-positive, alpha-beta T cell differentiation
GO:0043374 IEA CD8-positive, alpha-beta T cell differentiation
GO:0050798 IEA activated T cell proliferation
GO:0060004 IEA reflex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000140979 Satb1-004 protein_coding Mus_musculus 0 4154
ENSMUST00000152830 Satb1-002 protein_coding Mus_musculus 0 3085
ENSMUST00000129667 Satb1-003 protein_coding Mus_musculus 0 2595
ENSMUST00000169480 Satb1-201 protein_coding Mus_musculus 0 2591
ENSMUST00000176669 Satb1-012 protein_coding Mus_musculus 0 2591
ENSMUST00000133574 Satb1-005 protein_coding Mus_musculus 0 2591
ENSMUST00000144331 Satb1-001 protein_coding Mus_musculus 0 2591
ENSMUST00000140727 Satb1-013 processed_transcript Mus_musculus 0 769
ENSMUST00000129205 Satb1-011 protein_coding Mus_musculus 0 741
ENSMUST00000137697 Satb1-009 retained_intron Mus_musculus 0 610
ENSMUST00000121556 Gm15263-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000124222 Satb1-008 protein_coding Mus_musculus 0 407
ENSDART00000101631 SATB1-201 protein_coding Danio_rerio 0 399
ENSMUST00000146414 Satb1-006 retained_intron Mus_musculus 0 394
ENSMUST00000148559 Satb1-010 protein_coding Mus_musculus 2e-35 156
ENSDART00000055756 tbc1d12a-001 protein_coding Danio_rerio 0.0002 53

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