C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glypican 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183098 GPC6 9606 + 13:93226842-94407401 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377047 GPC6-001 93226842-94407401 protein_coding
  ENST00000617456 GPC6-201 94286348-94403217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377047ENST00000617456
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377047 0.976±0.00 1.589±0.00 1.885±0.00 0.829±0.11 2.559±0.49 3.705±1.33 0.475±0.03 4.153±1.13 3.424±0.00 1.887±0.44 0.213±0.17 3.378±1.93 0.282±0.07 1.862±1.48
ENST00000617456 N/A N/A N/A N/A N/A N/A 0.524±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EC CIL_0002EC_0001 CGP 13:91398675-94407401
CIL_0000E8 CIL_0000E8_0001 CGP 13:93226842-94479682

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005634 IDA nucleus
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007603 TAS phototransduction, visible light
GO:0016020 IEA membrane
GO:0016477 IDA cell migration
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0031225 IEA anchored component of membrane
GO:0043202 TAS lysosomal lumen
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036468 GPC6 (1 of 3) glypican 6 protein_coding Danio_rerio
ENSDARG00000086960 GPC6 (2 of 3) glypican 6 protein_coding Danio_rerio
ENSDARG00000091739 GPC6 (3 of 3) glypican 6 protein_coding Danio_rerio
ENSMUSG00000058571 Gpc6 glypican 6 protein_coding Mus_musculus

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