C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glypican 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377047 GPC6-001 ENSG00000183098 9606 + 13:93226842-94407401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377047
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377047 0.976±0.00 1.589±0.00 1.885±0.00 0.829±0.11 2.559±0.49 3.705±1.33 0.475±0.03 4.153±1.13 3.424±0.00 1.887±0.44 0.213±0.17 3.378±1.93 0.282±0.07 1.862±1.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EC CIL_0002EC_0001 CGP 13:91398675-94407401
CIL_0000E8 CIL_0000E8_0001 CGP 13:93226842-94479682

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001523 TAS retinoid metabolic process
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005634 IDA nucleus
GO:0005796 TAS Golgi lumen
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0006027 TAS glycosaminoglycan catabolic process
GO:0007603 TAS phototransduction, visible light
GO:0016020 IEA membrane
GO:0016477 IDA cell migration
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0031225 IEA anchored component of membrane
GO:0043202 TAS lysosomal lumen
GO:0043395 IEA heparan sulfate proteoglycan binding
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078849 Gpc6-001 protein_coding Mus_musculus 0 2977
ENSMUST00000088483 Gpc6-004 protein_coding Mus_musculus 0 2590
ENSMUST00000125435 Gpc6-002 protein_coding Mus_musculus 0 1748
ENSMUST00000123239 Gpc6-003 retained_intron Mus_musculus 0 1548

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