C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glypican 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000058571 Gpc6 10090 + 14:116925297-117979529 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000078849 Gpc6-001 116925297-117979529 protein_coding
  ENSMUST00000088483 Gpc6-004 116925430-117976544 protein_coding
  ENSMUST00000123239 Gpc6-003 116925315-117627198 retained_intron
  ENSMUST00000125435 Gpc6-002 116925531-117975406 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000078849ENSMUST00000088483ENSMUST00000125435
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000078849 3.469±0.61 1.919±0.60 13.079±1.56 2.854±1.64 3.898±1.33 1.340±0.16 1.747±0.65 1.892±0.37 1.143±1.00 0.903±0.36 3.859±2.55 1.094±0.52 0.160±0.07
ENSMUST00000088483 N/A N/A N/A N/A 1.629±0.10 0.656±0.20 N/A N/A N/A 0.449±0.00 N/A 0.326±0.00 N/A
ENSMUST00000125435 2.126±0.00 2.102±0.00 N/A N/A 1.500±0.00 0.455±0.06 N/A N/A N/A N/A 0.906±0.00 N/A 0.160±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EC CIL_0002EC_0002 CGP 14:115092215-117979529
CIL_0000E8 CIL_0000E8_0002 CGP 14:116925297-118052246

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005634 IEA nucleus
GO:0005796 TAS Golgi lumen
GO:0005887 ISS integral component of plasma membrane
GO:0016477 ISS cell migration
GO:0031225 IEA anchored component of membrane
GO:0043395 IEA heparan sulfate proteoglycan binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036468 GPC6 (1 of 3) glypican 6 protein_coding Danio_rerio
ENSDARG00000086960 GPC6 (2 of 3) glypican 6 protein_coding Danio_rerio
ENSDARG00000091739 GPC6 (3 of 3) glypican 6 protein_coding Danio_rerio
ENSG00000183098 GPC6 glypican 6 protein_coding Homo_sapiens

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