C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 41
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000507955 DDX41-001 ENSG00000183258 9606 - 5:177511577-177517469 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLungOvaryPlacentaTestisENST00000507955
Transcript ID Bladder Brain Breast Heart Lung Ovary Placenta Testis
ENST00000507955 0.523±0.00 3.888±0.00 0.500±0.00 0.433±0.00 1.455±0.00 5.376±3.12 13.019±0.00 12.294±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A2 CIL_0008A2_0001 VISTA 5:177089375-177692188
CIL_0000XC CIL_0000XC_0002 CGP 5:177501907-177517469
CIL_0002YP CIL_0002YP_0001 CGP 5:177511577-177554541

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005829 TAS cytosol
GO:0006396 TAS RNA processing
GO:0006915 TAS apoptotic process
GO:0007275 TAS multicellular organismal development
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0032479 TAS regulation of type I interferon production
GO:0032481 TAS positive regulation of type I interferon production
GO:0035458 IEA cellular response to interferon-beta
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051607 IEA defense response to virus
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021956 Ddx41-201 protein_coding Mus_musculus 0 2390

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