C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: smoothelin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183963 SMTN 9606 + 22:31064105-31104757 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000333137 SMTN-002 31081319-31104624 protein_coding
  ENST00000347557 SMTN-001 31081319-31104624 protein_coding
  ENST00000358743 SMTN-003 31081319-31104623 protein_coding
  ENST00000404574 SMTN-009 31093358-31104623 protein_coding
  ENST00000416786 SMTN-018 31085094-31089785 protein_coding
  ENST00000422839 SMTN-012 31064118-31088024 protein_coding
  ENST00000426927 SMTN-015 31081318-31088574 protein_coding
  ENST00000431481 SMTN-017 31087878-31089725 protein_coding
  ENST00000432777 SMTN-011 31064105-31088025 protein_coding
  ENST00000438223 SMTN-023 31082485-31088880 protein_coding
  ENST00000440425 SMTN-013 31081318-31088605 protein_coding
  ENST00000455608 SMTN-021 31092468-31099173 protein_coding
  ENST00000460658 SMTN-006 31088102-31101783 retained_intron
  ENST00000466272 SMTN-020 31089656-31091027 retained_intron
  ENST00000472911 SMTN-022 31099662-31104623 retained_intron
  ENST00000475548 SMTN-019 31081318-31088724 processed_transcript
  ENST00000482444 SMTN-014 31081318-31088591 protein_coding
  ENST00000489337 SMTN-004 31081320-31104623 retained_intron
  ENST00000493335 SMTN-007 31093368-31104623 retained_intron
  ENST00000497697 SMTN-016 31081319-31088253 retained_intron
  ENST00000504335 SMTN-024 31101876-31104757 retained_intron
  ENST00000612341 SMTN-201 31084996-31104623 protein_coding
  ENST00000619644 SMTN-202 31082860-31104623 protein_coding
  ENST00000624247 SMTN-026 31095560-31104624 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333137ENST00000347557ENST00000404574ENST00000455608ENST00000460658ENST00000489337ENST00000493335ENST00000504335ENST00000612341ENST00000624247
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333137 30.223±0.00 N/A N/A 1.913±0.00 14.140±0.00 N/A 6.712±0.00 15.740±0.00 2.452±0.00 46.637±0.00 12.005±0.00 20.504±11.09 18.170±2.99 3.628±0.00
ENST00000347557 15.442±0.00 34.980±0.00 N/A N/A 8.939±0.00 56.006±47.33 1.213±0.00 N/A 21.987±0.00 N/A N/A 15.921±0.00 11.753±0.00 31.068±0.00
ENST00000404574 N/A N/A N/A N/A N/A N/A 18.169±13.89 N/A N/A N/A 11.327±7.08 N/A N/A N/A
ENST00000455608 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.523±0.00 42.846±0.00 14.669±0.00 N/A
ENST00000460658 N/A N/A N/A 0.808±0.00 N/A N/A N/A N/A N/A 0.599±0.00 N/A 5.054±2.65 N/A 2.473±0.00
ENST00000489337 N/A N/A 3.794±0.00 0.397±0.00 8.010±0.00 7.025±0.00 N/A 1.154±0.00 30.895±0.00 11.043±8.82 N/A 9.180±3.68 N/A 2.973±0.00
ENST00000493335 N/A N/A 3.985±0.00 N/A N/A N/A 3.526±1.69 N/A N/A N/A N/A N/A N/A N/A
ENST00000504335 N/A N/A N/A 0.178±0.00 N/A N/A N/A N/A N/A N/A N/A 10.314±0.00 N/A N/A
ENST00000612341 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.910±0.00 N/A N/A N/A N/A
ENST00000624247 N/A 61.746±0.00 N/A N/A 17.066±0.00 374.590±0.00 N/A 27.717±0.00 17.699±13.80 N/A N/A N/A N/A 40.283±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 TAS actin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 TAS cytoskeleton
GO:0006939 TAS smooth muscle contraction
GO:0007517 TAS muscle organ development
GO:0008307 TAS structural constituent of muscle
GO:0015629 IDA actin cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059442 smtnb smoothelin b protein_coding Danio_rerio
ENSMUSG00000020439 Smtn smoothelin protein_coding Mus_musculus

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