C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smoothelin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347557 SMTN-001 ENSG00000183963 9606 + 22:31081319-31104624 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverOvaryPlacentaTestisENST00000347557
Transcript ID Adipose Adrenal Breast Colon Heart Liver Ovary Placenta Testis
ENST00000347557 15.442±0.00 34.980±0.00 8.939±0.00 56.006±47.33 1.213±0.00 21.987±0.00 15.921±0.00 11.753±0.00 31.068±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 TAS actin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 TAS cytoskeleton
GO:0006939 TAS smooth muscle contraction
GO:0007517 TAS muscle organ development
GO:0008307 TAS structural constituent of muscle
GO:0015629 IDA actin cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075118 Smtn-003 protein_coding Mus_musculus 0 2512
ENSMUST00000170588 Smtn-201 protein_coding Mus_musculus 0 2239
ENSMUST00000020721 Smtn-001 protein_coding Mus_musculus 0 2239
ENSMUST00000110011 Smtn-009 protein_coding Mus_musculus 0 2239
ENSMUST00000154861 Smtn-004 processed_transcript Mus_musculus 0 1744
ENSMUST00000020718 Smtn-002 protein_coding Mus_musculus 0 553
ENSMUST00000144635 Smtn-005 processed_transcript Mus_musculus 0 346
ENSMUST00000050226 Smtnl2-201 protein_coding Mus_musculus 0 239
ENSMUST00000108500 Smtnl2-001 protein_coding Mus_musculus 0 239

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