C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: smoothelin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333137 SMTN-002 ENSG00000183963 9606 + 22:31081319-31104624 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333137
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333137 30.223±0.00 1.913±0.00 14.140±0.00 6.712±0.00 15.740±0.00 2.452±0.00 46.637±0.00 12.005±0.00 20.504±11.09 18.170±2.99 3.628±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 TAS actin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 TAS cytoskeleton
GO:0006939 TAS smooth muscle contraction
GO:0007517 TAS muscle organ development
GO:0008307 TAS structural constituent of muscle
GO:0015629 IDA actin cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170588 Smtn-201 protein_coding Mus_musculus 0 2800
ENSMUST00000020721 Smtn-001 protein_coding Mus_musculus 0 2800
ENSMUST00000110011 Smtn-009 protein_coding Mus_musculus 0 2359
ENSMUST00000154861 Smtn-004 processed_transcript Mus_musculus 0 2305
ENSMUST00000075118 Smtn-003 protein_coding Mus_musculus 0 2239
ENSMUST00000020718 Smtn-002 protein_coding Mus_musculus 0 1116
ENSMUST00000144635 Smtn-005 processed_transcript Mus_musculus 0 632
ENSMUST00000050226 Smtnl2-201 protein_coding Mus_musculus 6e-20 104
ENSMUST00000108500 Smtnl2-001 protein_coding Mus_musculus 6e-20 104

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