C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sec1 family domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184178 SCFD2 9606 - 4:52872982-53366075 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000388940 SCFD2-002 52873788-53366061 protein_coding
  ENST00000401642 SCFD2-001 52872982-53366075 protein_coding
  ENST00000503450 SCFD2-003 53352598-53366066 protein_coding
  ENST00000611795 SCFD2-201 53273579-53365941 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000388940ENST00000401642ENST00000503450ENST00000611795
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000388940 2.897±0.00 3.030±0.00 N/A 2.612±0.95 3.079±0.00 1.529±0.54 0.714±0.51 2.255±0.00 1.412±0.14 1.594±0.56 1.345±0.31 1.621±0.52 2.489±0.18 1.169±0.59
ENST00000401642 0.609±0.00 N/A N/A 1.024±0.00 2.655±0.00 0.968±0.00 0.366±0.00 1.628±0.00 1.035±0.00 0.782±0.00 N/A 3.093±0.40 2.486±0.93 0.977±0.00
ENST00000503450 N/A N/A 2.147±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611795 N/A N/A 1.027±0.00 0.720±0.00 N/A 3.022±0.00 1.279±0.00 2.494±0.00 1.696±0.00 1.236±0.00 2.199±0.00 2.495±0.00 N/A 1.049±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082M CIL_00082M_0001 VISTA 4:52657438-53260296
CIL_0008RT CIL_0008RT_0001 VISTA 4:52776116-53378130
CIL_0001CR CIL_0001CR_0001 CGP 4:52862290-53366075
CIL_0001CS CIL_0001CS_0001 CGP 4:52872982-54295272

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0008150 ND biological_process
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040005 scfd2 sec1 family domain containing 2 protein_coding Danio_rerio
ENSDARG00000093336 SCFD2 (2 of 2) sec1 family domain containing 2 protein_coding Danio_rerio
ENSMUSG00000062110 Scfd2 Sec1 family domain containing 2 protein_coding Mus_musculus

Loading