C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sec1 family domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401642 SCFD2-001 ENSG00000184178 9606 - 4:52872982-53366075 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000401642
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000401642 0.609±0.00 1.024±0.00 2.655±0.00 0.968±0.00 0.366±0.00 1.628±0.00 1.035±0.00 0.782±0.00 3.093±0.40 2.486±0.93 0.977±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082M CIL_00082M_0001 VISTA 4:52657438-53260296
CIL_0008RT CIL_0008RT_0001 VISTA 4:52776116-53378130
CIL_0001CR CIL_0001CR_0001 CGP 4:52862290-53366075
CIL_0001CS CIL_0001CS_0001 CGP 4:52872982-54295272

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0008150 ND biological_process
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072857 Scfd2-001 protein_coding Mus_musculus 0 2109
ENSMUST00000113542 Scfd2-002 protein_coding Mus_musculus 0 1831
ENSMUST00000121330 Scfd2-003 protein_coding Mus_musculus 0 1666
ENSMUST00000151474 Scfd2-004 protein_coding Mus_musculus 0 1360
ENSMUST00000075848 Scfd2-005 nonsense_mediated_decay Mus_musculus 0 1360
ENSMUST00000123203 Scfd2-006 processed_transcript Mus_musculus 0 996

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