C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sec1 family domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000062110 Scfd2 10090 - 5:74204816-74531747 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000072857 Scfd2-001 74204816-74531742 protein_coding
  ENSMUST00000075848 Scfd2-005 74447780-74531747 nonsense_mediated_decay
  ENSMUST00000113542 Scfd2-002 74206093-74531619 protein_coding
  ENSMUST00000121330 Scfd2-003 74206128-74531742 protein_coding
  ENSMUST00000123203 Scfd2-006 74515163-74531742 processed_transcript
  ENSMUST00000142216 Scfd2-007 74458373-74479126 processed_transcript
  ENSMUST00000146015 Scfd2-009 74206089-74225484 retained_intron
  ENSMUST00000148994 Scfd2-008 74395135-74397738 processed_transcript
  ENSMUST00000151474 Scfd2-004 74456260-74531747 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072857ENSMUST00000075848ENSMUST00000113542ENSMUST00000121330ENSMUST00000123203ENSMUST00000146015ENSMUST00000151474
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072857 1.296±0.36 2.191±0.11 1.378±0.18 1.683±0.15 1.364±0.70 1.256±0.34 N/A 1.075±0.27 1.037±0.37 1.401±0.13 0.809±0.24 1.421±0.62 0.782±0.27 1.187±0.21
ENSMUST00000075848 1.267±0.11 2.104±0.46 N/A N/A 1.445±0.32 1.513±0.36 0.429±0.00 0.801±0.31 0.617±0.07 0.970±0.29 N/A 1.945±1.09 N/A N/A
ENSMUST00000113542 N/A N/A 0.586±0.00 0.947±0.00 3.160±0.00 N/A 0.900±0.10 0.716±0.07 0.836±0.47 0.735±0.00 0.926±0.15 1.821±0.40 1.378±0.48 2.435±0.17
ENSMUST00000121330 2.086±0.40 1.888±0.40 1.331±0.49 2.293±1.22 2.170±1.08 1.811±1.21 1.664±0.32 1.674±0.62 1.471±0.42 1.828±0.26 1.002±0.18 1.854±0.57 2.140±0.71 1.306±0.14
ENSMUST00000123203 N/A 4.085±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146015 N/A N/A N/A N/A N/A N/A 2.274±0.17 3.300±0.37 N/A N/A 2.196±0.31 4.792±0.00 5.093±1.02 5.412±1.68
ENSMUST00000151474 0.660±0.00 1.055±0.00 0.325±0.00 N/A 0.759±0.00 0.659±0.10 N/A 0.386±0.02 0.439±0.14 0.500±0.05 N/A 0.740±0.29 0.420±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00082M CIL_00082M_0002 VISTA 5:73965657-74568205
CIL_0008RT CIL_0008RT_0002 VISTA 5:74061294-74663523
CIL_0007V9 CIL_0007V9_0002 VISTA 5:74131979-74735797
CIL_0001CR CIL_0001CR_0002 CGP 5:74195288-74531747
CIL_0001CS CIL_0001CS_0002 CGP 5:74204816-74598790

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006904 IEA vesicle docking involved in exocytosis
GO:0008150 ND biological_process
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040005 scfd2 sec1 family domain containing 2 protein_coding Danio_rerio
ENSDARG00000093336 SCFD2 (2 of 2) sec1 family domain containing 2 protein_coding Danio_rerio
ENSG00000184178 SCFD2 sec1 family domain containing 2 protein_coding Homo_sapiens

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