C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil serine-rich protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000184305 CCSER1 9606 + 4:90127535-91601913 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000432775 CCSER1-002 90235031-90782004 protein_coding
  ENST00000502478 CCSER1-008 90628021-90642471 nonsense_mediated_decay
  ENST00000503421 CCSER1-011 90649511-90911313 protein_coding
  ENST00000504150 CCSER1-010 90649508-90780771 processed_transcript
  ENST00000505073 CCSER1-003 90127535-90923530 nonsense_mediated_decay
  ENST00000508086 CCSER1-007 90313013-90468622 retained_intron
  ENST00000508550 CCSER1-005 90309492-90404131 nonsense_mediated_decay
  ENST00000509109 CCSER1-004 90649520-91130040 nonsense_mediated_decay
  ENST00000509176 CCSER1-001 90127585-91601913 protein_coding
  ENST00000510519 CCSER1-012 90649520-90780568 nonsense_mediated_decay
  ENST00000513522 CCSER1-009 90628025-90938832 nonsense_mediated_decay
  ENST00000514352 CCSER1-006 90312960-90468448 retained_intron
  ENST00000515693 CCSER1-013 90815813-90951312 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000432775ENST00000504150ENST00000505073ENST00000508550ENST00000509176ENST00000513522ENST00000514352
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000432775 N/A N/A N/A 0.569±0.00 N/A N/A N/A N/A N/A 0.184±0.00 N/A 0.506±0.00
ENST00000504150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.071±0.00
ENST00000505073 N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A 0.025±0.00 N/A 0.171±0.00 0.503±0.09
ENST00000508550 N/A N/A N/A N/A 0.431±0.00 N/A N/A 0.015±0.00 N/A 0.935±0.00 N/A N/A
ENST00000509176 0.226±0.00 0.038±0.00 0.699±0.19 0.275±0.20 0.142±0.00 0.146±0.00 0.262±0.00 0.227±0.00 0.017±0.00 0.107±0.00 0.043±0.02 0.434±0.15
ENST00000513522 N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A 0.194±0.00 N/A
ENST00000514352 N/A N/A N/A 0.231±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083N CIL_00083N_0001 VISTA 4:89695882-90299902
CIL_0000KN CIL_0000KN_0001 CGP 4:89879532-91601913
CIL_0001RV CIL_0001RV_0002 CGP 4:90127535-93774556

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075919 CCSER1 coiled-coil serine-rich protein 1 protein_coding Danio_rerio
ENSMUSG00000039578 Ccser1 coiled-coil serine rich 1 protein_coding Mus_musculus

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