C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00083N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1374 VISTA 9606 4:89695882-90299902
GeneTranscriptPositionBiotype
ENSG00000138722 (MMRN1)
multimerin 1 		ENST00000264790 (MMRN1-201) 89894901-89954627 protein_coding
ENST00000394980 (MMRN1-001) 89879532-89954629 protein_coding
ENST00000506328 (MMRN1-006) 89951445-89953455 retained_intron
ENST00000508372 (MMRN1-003) 89901983-89953455 protein_coding
ENSG00000145335 (SNCA)
synuclein, alpha (non A4 component of amyloid precursor) 		ENST00000336904 (SNCA-003) 89724099-89838315 protein_coding
ENST00000345009 (SNCA-005) 89725884-89835680 protein_coding
ENST00000394986 (SNCA-001) 89726053-89837139 protein_coding
ENST00000394989 (SNCA-201) 89724105-89837199 protein_coding
ENST00000394991 (SNCA-002) 89726053-89837228 protein_coding
ENST00000420646 (SNCA-202) 89724099-89836976 protein_coding
ENST00000502987 (SNCA-009) 89821849-89835695 protein_coding
ENST00000505199 (SNCA-004) 89726616-89835685 protein_coding
ENST00000506244 (SNCA-006) 89726577-89837168 protein_coding
ENST00000506691 (SNCA-007) 89822352-89837076 protein_coding
ENST00000508895 (SNCA-008) 89726258-89836213 protein_coding
ENST00000611107 (SNCA-010) 89726628-89835667 protein_coding
ENST00000618500 (SNCA-203) 89724099-89836213 protein_coding
ENSG00000184305 (CCSER1)
coiled-coil serine-rich protein 1 		ENST00000432775 (CCSER1-002) 90235031-90782004 protein_coding
ENST00000502478 (CCSER1-008) 90628021-90642471 nonsense_mediated_decay
ENST00000503421 (CCSER1-011) 90649511-90911313 protein_coding
ENST00000504150 (CCSER1-010) 90649508-90780771 processed_transcript
ENST00000505073 (CCSER1-003) 90127535-90923530 nonsense_mediated_decay
ENST00000508086 (CCSER1-007) 90313013-90468622 retained_intron
ENST00000508550 (CCSER1-005) 90309492-90404131 nonsense_mediated_decay
ENST00000509109 (CCSER1-004) 90649520-91130040 nonsense_mediated_decay
ENST00000509176 (CCSER1-001) 90127585-91601913 protein_coding
ENST00000510519 (CCSER1-012) 90649520-90780568 nonsense_mediated_decay
ENST00000513522 (CCSER1-009) 90628025-90938832 nonsense_mediated_decay
ENST00000514352 (CCSER1-006) 90312960-90468448 retained_intron
ENST00000515693 (CCSER1-013) 90815813-90951312 processed_transcript
ENSG00000247775 (SNCA-AS1)
SNCA antisense RNA 1 		ENST00000501215 (SNCA-AS1-001) 89836424-89840595 antisense
ENST00000513653 (SNCA-AS1-002) 89836408-89841978 antisense
ENSG00000251095 (RP11-115D19.1)
 ENST00000506864 (RP11-115D19.1-006) 89551356-89691373 antisense
ENST00000507916 (RP11-115D19.1-003) 89627784-89720172 antisense
ENST00000508021 (RP11-115D19.1-005) 89551390-89726503 antisense
ENST00000509723 (RP11-115D19.1-001) 89587909-89654661 antisense
ENST00000512077 (RP11-115D19.1-002) 89587866-89660355 antisense
ENST00000513572 (RP11-115D19.1-004) 89681512-89694130 antisense
ENST00000612706 (RP11-115D19.1-007) 89681523-89686704 antisense
ENST00000621944 (RP11-115D19.1-008) 89720342-89726752 antisense
ENSG00000274238 (RP11-115D19.3)
 ENST00000610572 (RP11-115D19.3-001) 89743792-89744305 antisense
ENSG00000276542 (RP11-115D19.2)
 ENST00000620420 (RP11-115D19.2-001) 89748283-89749154 antisense
ENSG00000277695 (RP11-115D19.4)
 ENST00000615968 (RP11-115D19.4-001) 89747802-89755853 antisense

Homo sapiens Ensembl (GRCh38)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_00083N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1374 VISTA 10090 6:60741566-61344404
GeneTranscriptPositionBiotype
ENSMUSG00000025889 (Snca)
synuclein, alpha 		ENSMUST00000114268 (Snca-201) 60731573-60828996 protein_coding
ENSMUST00000163779 (Snca-202) 60731573-60829855 protein_coding
ENSMUSG00000039578 (Ccser1)
coiled-coil serine rich 1 		ENSMUST00000045522 (Ccser1-201) 61310855-62380267 protein_coding
ENSMUST00000067307 (Ccser1-002) 61373997-61811718 protein_coding
ENSMUST00000126214 (Ccser1-001) 61180324-62382865 protein_coding
ENSMUST00000131989 (Ccser1-003) 61180538-61312608 retained_intron
ENSMUST00000133478 (Ccser1-004) 61180537-61312977 retained_intron
ENSMUST00000134710 (Ccser1-005) 61570670-61820586 protein_coding
ENSMUST00000145554 (Ccser1-007) 61374005-61718385 retained_intron
ENSMUST00000147576 (Ccser1-006) 61313801-61571006 retained_intron
ENSMUSG00000054641 (Mmrn1)
multimerin 1 		ENSMUST00000129603 (Mmrn1-001) 60944476-60989378 protein_coding
ENSMUST00000145763 (Mmrn1-002) 60924976-60946118 retained_intron
ENSMUSG00000097924 (A730020E08Rik)
RIKEN cDNA A730020E08 gene 		ENSMUST00000180421 (A730020E08Rik-201) 61175613-61180270 lincRNA
ENSMUST00000181288 (A730020E08Rik-202) 61176021-61180810 lincRNA

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138722 ENST00000264790 4.206±0.00 26.913±0.00 0.166±0.00 0.155±0.09 N/A 4.079±2.37 0.708±0.53 0.811±0.02 3.456±0.04 5.340±0.28 0.812±0.55 1.154±0.66 10.584±6.49 4.407±0.00
ENST00000394980 N/A N/A N/A N/A 1.871±0.00 0.560±0.00 0.116±0.00 N/A 2.281±0.00 N/A N/A 0.623±0.23 N/A N/A
ENST00000506328 N/A N/A 0.373±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508372 N/A N/A N/A 0.136±0.02 1.074±0.00 0.660±0.00 N/A N/A N/A 1.410±0.00 N/A N/A N/A 2.879±0.00
ENSG00000145335 ENST00000336904 N/A N/A N/A 7.566±0.00 N/A 0.230±0.00 N/A N/A 0.521±0.00 0.624±0.00 N/A 0.537±0.00 1.035±0.07 N/A
ENST00000345009 N/A N/A 0.209±0.00 N/A N/A 0.256±0.00 0.125±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000394986 N/A N/A N/A N/A N/A 1.841±0.00 N/A N/A N/A N/A N/A N/A N/A 0.634±0.00
ENST00000394989 0.473±0.00 0.540±0.00 N/A 25.275±0.00 0.304±0.00 1.761±0.00 0.112±0.00 N/A 0.013±0.00 1.467±0.00 0.011±0.00 0.469±0.00 N/A 0.401±0.16
ENST00000394991 0.755±0.00 0.880±0.00 N/A N/A 0.776±0.00 2.142±0.00 0.474±0.00 N/A 0.746±0.71 5.007±3.18 N/A 4.329±1.31 4.178±1.71 1.473±0.00
ENST00000420646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.272±0.00 N/A N/A
ENST00000502987 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505199 N/A N/A N/A N/A N/A N/A N/A 0.597±0.00 N/A N/A N/A N/A N/A N/A
ENST00000506244 3.123±0.00 3.495±0.00 N/A 127.217±0.00 2.250±0.00 12.606±0.00 N/A N/A N/A N/A N/A 7.394±2.29 6.316±0.00 5.826±0.00
ENST00000506691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.348±0.00 N/A N/A N/A
ENST00000508895 0.863±0.00 N/A N/A 36.506±21.81 1.591±0.00 2.376±1.89 2.189±0.00 2.358±0.00 0.644±0.00 17.354±0.00 0.399±0.00 5.017±4.18 6.362±1.77 2.395±0.78
ENST00000611107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.469±0.00 N/A N/A N/A
ENST00000618500 N/A N/A 0.249±0.00 N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A
ENSG00000184305 ENST00000432775 N/A N/A N/A N/A 0.569±0.00 N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A 0.506±0.00
ENST00000502478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.071±0.00
ENST00000505073 N/A N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A 0.025±0.00 N/A 0.171±0.00 0.503±0.09
ENST00000508086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508550 N/A N/A N/A N/A N/A 0.431±0.00 N/A N/A 0.015±0.00 N/A N/A 0.935±0.00 N/A N/A
ENST00000509109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509176 0.226±0.00 0.038±0.00 N/A 0.699±0.19 0.275±0.20 0.142±0.00 0.146±0.00 0.262±0.00 0.227±0.00 N/A 0.017±0.00 0.107±0.00 0.043±0.02 0.434±0.15
ENST00000510519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513522 N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A 0.194±0.00 N/A
ENST00000514352 N/A N/A N/A N/A 0.231±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000247775 ENST00000501215 N/A N/A N/A N/A N/A N/A 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000513653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000251095 ENST00000506864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.829±0.00 N/A N/A
ENST00000507916 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512077 N/A N/A N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A N/A N/A N/A
ENST00000513572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.017±0.00 N/A 1.204±0.00 N/A
ENST00000612706 N/A N/A N/A N/A 0.324±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000274238 ENST00000610572 N/A N/A 0.536±0.00 0.107±0.00 N/A N/A N/A N/A N/A N/A N/A 0.050±0.00 0.210±0.00 N/A
ENSG00000276542 ENST00000620420 0.043±0.00 N/A N/A 0.038±0.02 N/A 0.543±0.00 0.318±0.00 0.130±0.08 0.136±0.00 0.048±0.00 N/A N/A 0.080±0.00 0.048±0.03
ENSG00000277695 ENST00000615968 N/A 0.255±0.00 N/A N/A 0.025±0.00 N/A 0.102±0.05 N/A N/A N/A 0.089±0.00 N/A N/A 0.023±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025889 ENSMUST00000114268 0.400±0.06 0.387±0.22 0.728±0.11 29.337±16.48 0.322±0.00 0.311±0.02 11.911±10.31 1.491±0.49 148.798±108.71 1.972±0.93 0.473±0.10 0.814±0.27 8.545±4.66 0.155±0.00
ENSMUST00000163779 0.380±0.18 0.306±0.14 0.276±0.06 15.778±12.15 0.532±0.19 0.405±0.17 3.028±1.56 0.990±0.44 0.326±0.08 3.097±1.16 0.191±0.06 0.549±0.29 0.378±0.00 0.127±0.09
ENSMUSG00000039578 ENSMUST00000045522 N/A N/A N/A 2.969±1.76 0.249±0.07 N/A 0.085±0.03 N/A 0.025±0.01 N/A 0.054±0.04 N/A N/A 0.060±0.03
ENSMUST00000067307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.148±0.08
ENSMUST00000126214 N/A 0.078±0.03 N/A 2.671±1.54 N/A N/A 0.015±0.00 N/A 0.008±0.01 N/A 0.015±0.00 0.112±0.11 N/A 0.015±0.00
ENSMUST00000131989 0.208±0.05 0.106±0.05 N/A N/A 0.651±0.25 1.297±0.00 0.049±0.01 0.647±0.10 0.018±0.01 0.796±0.00 0.050±0.02 0.657±0.28 N/A 0.087±0.00
ENSMUST00000133478 0.128±0.00 N/A N/A N/A N/A 1.391±0.00 N/A N/A 0.012±0.00 0.693±0.00 N/A 0.249±0.00 N/A N/A
ENSMUST00000134710 0.183±0.00 0.331±0.00 1.167±0.34 N/A 0.308±0.00 N/A 0.134±0.12 1.251±0.31 0.056±0.04 1.709±0.07 0.057±0.04 0.285±0.12 1.194±0.65 0.077±0.06
ENSMUST00000145554 N/A N/A N/A N/A 0.683±0.00 N/A N/A N/A N/A N/A 0.165±0.00 N/A N/A 0.078±0.00
ENSMUST00000147576 N/A 0.399±0.00 N/A N/A N/A N/A N/A N/A 0.061±0.03 N/A 0.210±0.11 1.149±0.00 N/A N/A
ENSMUSG00000054641 ENSMUST00000129603 2.337±1.99 0.144±0.07 3.770±0.35 0.923±0.21 1.470±0.23 3.854±0.70 1.278±0.20 0.611±0.11 1.343±1.28 3.386±0.12 0.202±0.05 5.724±1.30 0.743±0.68 0.112±0.04
ENSMUST00000145763 N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000097924 ENSMUST00000180421 0.152±0.10 0.204±0.11 N/A 1.137±0.80 0.364±0.25 3.206±0.63 0.081±0.00 0.524±0.32 0.026±0.02 1.418±0.19 0.024±0.01 0.595±0.41 0.337±0.13 0.055±0.02
ENSMUST00000181288 N/A N/A N/A 0.229±0.00 0.154±0.00 N/A 0.060±0.00 0.059±0.01 0.023±0.01 N/A 0.046±0.02 0.093±0.00 0.215±0.11 0.072±0.03

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