C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001RV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000075919-ENSDARG00000055302 CGP 7955 8:29572734-30435745
GeneTranscriptPositionBiotype
ENSDARG00000055302 (grid2)
glutamate receptor, ionotropic, delta 2 		ENSDART00000077647 (grid2-201) 30115135-30435529 protein_coding
ENSDART00000127112 (grid2-202) 29830544-29830696 protein_coding
ENSDART00000141634 (grid2-001) 29748731-30435745 protein_coding
ENSDARG00000075919 (CCSER1)
coiled-coil serine-rich protein 1 		ENSDART00000108865 (CCSER1-201) 29574953-29597933 protein_coding
ENSDART00000140115 (CCSER1-001) 29572734-29644061 protein_coding
ENSDARG00000096836 (si:ch211-247l22.4)
si:ch211-247l22.4 		ENSDART00000154459 (si:ch211-247l22.4-001) 30429537-30483965 lincRNA
CIL_0001RV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184305-ENSG00000152208 CGP 9606 4:90127535-93774556
GeneTranscriptPositionBiotype
ENSG00000152208 (GRID2)
glutamate receptor, ionotropic, delta 2 		ENST00000282020 (GRID2-001) 92304399-93774556 protein_coding
ENST00000502699 (GRID2-006) 92822949-93166161 nonsense_mediated_decay
ENST00000505687 (GRID2-003) 92304485-93217267 processed_transcript
ENST00000510992 (GRID2-002) 92304657-93772498 protein_coding
ENST00000512631 (GRID2-005) 93203949-93238421 protein_coding
ENST00000513976 (GRID2-007) 93238371-93306322 nonsense_mediated_decay
ENST00000515744 (GRID2-004) 92822949-93112247 processed_transcript
ENST00000611049 (GRID2-201) 93084986-93774553 protein_coding
ENSG00000184305 (CCSER1)
coiled-coil serine-rich protein 1 		ENST00000432775 (CCSER1-002) 90235031-90782004 protein_coding
ENST00000502478 (CCSER1-008) 90628021-90642471 nonsense_mediated_decay
ENST00000503421 (CCSER1-011) 90649511-90911313 protein_coding
ENST00000504150 (CCSER1-010) 90649508-90780771 processed_transcript
ENST00000505073 (CCSER1-003) 90127535-90923530 nonsense_mediated_decay
ENST00000508086 (CCSER1-007) 90313013-90468622 retained_intron
ENST00000508550 (CCSER1-005) 90309492-90404131 nonsense_mediated_decay
ENST00000509109 (CCSER1-004) 90649520-91130040 nonsense_mediated_decay
ENST00000509176 (CCSER1-001) 90127585-91601913 protein_coding
ENST00000510519 (CCSER1-012) 90649520-90780568 nonsense_mediated_decay
ENST00000513522 (CCSER1-009) 90628025-90938832 nonsense_mediated_decay
ENST00000514352 (CCSER1-006) 90312960-90468448 retained_intron
ENST00000515693 (CCSER1-013) 90815813-90951312 processed_transcript
ENSG00000187653 (TMSB4XP8)
thymosin beta 4, X-linked pseudogene 8 		ENST00000402089 (TMSB4XP8-001) 90838903-90839037 processed_pseudogene
ENSG00000248627 (RP11-428L21.1)
 ENST00000502570 (RP11-428L21.1-001) 92833685-92838842 antisense
ENSG00000248817 (RP11-562F9.1)
peptidase (mitochondrial processing) alpha pseudogene 1 		ENST00000508114 (RP11-562F9.1-001) 92182477-92184052 processed_pseudogene
ENSG00000248984 (AC004054.1)
 ENST00000515111 (AC004054.1-001) 91108023-91112790 antisense
ENSG00000249049 (RP11-763F8.1)
 ENST00000502368 (RP11-763F8.1-001) 91319034-91325306 antisense
ENSG00000249152 (RP11-562F9.2)
 ENST00000502518 (RP11-562F9.2-001) 92268767-92277075 lincRNA
ENSG00000249239 (RP11-428L21.2)
 ENST00000510601 (RP11-428L21.2-001) 92821986-92822918 processed_pseudogene
ENSG00000250908 (RP11-703C10.1)
 ENST00000505498 (RP11-703C10.1-001) 93318623-93319786 antisense
ENSG00000251401 (RP11-11N6.1)
 ENST00000513074 (RP11-11N6.1-001) 90682996-90683123 processed_pseudogene
ENSG00000251449 (MTND1P19)
MT-ND1 pseudogene 19 		ENST00000511780 (MTND1P19-001) 92702345-92702659 processed_pseudogene
ENSG00000252087 (RN7SKP248)
RNA, 7SK small nuclear pseudogene 248 		ENST00000516278 (RN7SKP248-201) 90370123-90370427 misc_RNA
ENSG00000279013 (RP11-254A24.2)
 ENST00000623567 (RP11-254A24.2-001) 91603275-91605292 TEC
CIL_0001RV_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039578-ENSMUSG00000071424 CGP 10090 6:61180324-64668282
GeneTranscriptPositionBiotype
ENSMUSG00000039578 (Ccser1)
coiled-coil serine rich 1 		ENSMUST00000045522 (Ccser1-201) 61310855-62380267 protein_coding
ENSMUST00000067307 (Ccser1-002) 61373997-61811718 protein_coding
ENSMUST00000126214 (Ccser1-001) 61180324-62382865 protein_coding
ENSMUST00000131989 (Ccser1-003) 61180538-61312608 retained_intron
ENSMUST00000133478 (Ccser1-004) 61180537-61312977 retained_intron
ENSMUST00000134710 (Ccser1-005) 61570670-61820586 protein_coding
ENSMUST00000145554 (Ccser1-007) 61374005-61718385 retained_intron
ENSMUST00000147576 (Ccser1-006) 61313801-61571006 retained_intron
ENSMUSG00000071424 (Grid2)
glutamate receptor, ionotropic, delta 2 		ENSMUST00000095852 (Grid2-001) 63256027-64668282 protein_coding
ENSMUST00000159319 (Grid2-003) 63255876-63314071 processed_transcript
ENSMUST00000159561 (Grid2-002) 63256006-64182477 protein_coding
ENSMUST00000160408 (Grid2-004) 63256195-63504872 retained_intron
ENSMUST00000161105 (Grid2-005) 63256826-64278792 retained_intron
ENSMUST00000162968 (Grid2-006) 64076792-64094748 retained_intron
ENSMUSG00000097924 (A730020E08Rik)
RIKEN cDNA A730020E08 gene 		ENSMUST00000180421 (A730020E08Rik-201) 61175613-61180270 lincRNA
ENSMUST00000181288 (A730020E08Rik-202) 61176021-61180810 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RV_0001ENSDARG00000055302ENSDART00000077647ENSDART00000127112ENSDART00000141634ENSDARG00000075919ENSDART00000108865ENSDART00000140115ENSDARG00000096836ENSDART00000154459CIL_0001RV_0002ENSG00000152208ENST00000282020ENST00000502699ENST00000505687ENST00000510992ENST00000512631ENST00000513976ENST00000515744ENST00000611049ENSG00000184305ENST00000432775ENST00000502478ENST00000503421ENST00000504150ENST00000505073ENST00000508086ENST00000508550ENST00000509109ENST00000509176ENST00000510519ENST00000513522ENST00000514352ENST00000515693ENSG00000187653ENST00000402089ENSG00000248627ENST00000502570ENSG00000248817ENST00000508114ENSG00000248984ENST00000515111ENSG00000249049ENST00000502368ENSG00000249152ENST00000502518ENSG00000249239ENST00000510601ENSG00000250908ENST00000505498ENSG00000251401ENST00000513074ENSG00000251449ENST00000511780ENSG00000252087ENST00000516278ENSG00000279013ENST00000623567CIL_0001RV_0003ENSMUSG00000039578ENSMUST00000045522ENSMUST00000067307ENSMUST00000126214ENSMUST00000131989ENSMUST00000133478ENSMUST00000134710ENSMUST00000145554ENSMUST00000147576ENSMUSG00000071424ENSMUST00000095852ENSMUST00000159319ENSMUST00000159561ENSMUST00000160408ENSMUST00000161105ENSMUST00000162968ENSMUSG00000097924ENSMUST00000180421ENSMUST00000181288
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RV_0001ENSDARG00000055302ENSDART00000077647ENSDART00000141634ENSDARG00000075919ENSDART00000108865ENSDART00000140115ENSDARG00000096836ENSDART00000154459CIL_0001RV_0002ENSG00000152208ENST00000282020ENST00000502699ENST00000505687ENST00000510992ENST00000512631ENST00000611049ENSG00000184305ENST00000432775ENST00000504150ENST00000505073ENST00000508550ENST00000509176ENST00000513522ENST00000514352ENSG00000187653ENST00000402089ENSG00000248627ENST00000502570ENSG00000248817ENST00000508114ENSG00000248984ENST00000515111ENSG00000249049ENST00000502368ENSG00000249152ENST00000502518ENSG00000249239ENST00000510601ENSG00000250908ENST00000505498ENSG00000251401ENST00000513074ENSG00000251449ENST00000511780ENSG00000252087ENST00000516278ENSG00000279013ENST00000623567CIL_0001RV_0003ENSMUSG00000039578ENSMUST00000045522ENSMUST00000067307ENSMUST00000126214ENSMUST00000131989ENSMUST00000133478ENSMUST00000134710ENSMUST00000145554ENSMUST00000147576ENSMUSG00000071424ENSMUST00000095852ENSMUST00000159319ENSMUST00000159561ENSMUST00000160408ENSMUST00000161105ENSMUST00000162968ENSMUSG00000097924ENSMUST00000180421ENSMUST00000181288
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000055302 ENSDART00000077647 N/A N/A N/A 5.673±0.00 N/A N/A 0.397±0.10 0.879±0.00 0.024±0.00 N/A 0.143±0.00 N/A N/A N/A
ENSDART00000127112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141634 N/A N/A N/A 4.333±0.00 N/A N/A N/A N/A N/A N/A 0.850±0.00 N/A N/A N/A
ENSDARG00000075919 ENSDART00000108865 N/A N/A N/A N/A N/A N/A N/A N/A 0.073±0.00 N/A 0.083±0.00 N/A N/A N/A
ENSDART00000140115 N/A N/A N/A 2.321±0.64 N/A N/A 0.483±0.00 1.234±0.00 0.315±0.00 N/A 0.132±0.00 N/A N/A N/A
ENSDARG00000096836 ENSDART00000154459 N/A N/A N/A 0.810±0.00 N/A N/A 0.241±0.06 0.340±0.06 N/A N/A 0.061±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000152208 ENST00000282020 N/A N/A N/A 0.552±0.00 N/A 0.061±0.00 0.011±0.00 N/A N/A N/A N/A 0.106±0.06 N/A N/A
ENST00000502699 N/A N/A N/A N/A N/A N/A 0.159±0.00 N/A 0.269±0.00 N/A N/A N/A N/A N/A
ENST00000505687 N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000510992 N/A N/A N/A 0.719±0.34 0.030±0.00 0.027±0.00 0.039±0.00 0.029±0.00 0.214±0.00 0.135±0.00 N/A N/A 0.036±0.02 1.472±0.37
ENST00000512631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.903±5.11
ENST00000513976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611049 0.007±0.00 N/A N/A N/A N/A N/A N/A 0.021±0.00 0.068±0.00 0.032±0.00 N/A 0.235±0.19 0.015±0.00 0.424±0.00
ENSG00000184305 ENST00000432775 N/A N/A N/A N/A 0.569±0.00 N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A 0.506±0.00
ENST00000502478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.071±0.00
ENST00000505073 N/A N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A 0.025±0.00 N/A 0.171±0.00 0.503±0.09
ENST00000508086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508550 N/A N/A N/A N/A N/A 0.431±0.00 N/A N/A 0.015±0.00 N/A N/A 0.935±0.00 N/A N/A
ENST00000509109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509176 0.226±0.00 0.038±0.00 N/A 0.699±0.19 0.275±0.20 0.142±0.00 0.146±0.00 0.262±0.00 0.227±0.00 N/A 0.017±0.00 0.107±0.00 0.043±0.02 0.434±0.15
ENST00000510519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513522 N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A 0.194±0.00 N/A
ENST00000514352 N/A N/A N/A N/A 0.231±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187653 ENST00000402089 1.227±0.00 1.529±0.00 13.858±0.00 0.168±0.00 0.515±0.00 3.616±2.65 N/A 1.763±0.00 3.449±2.98 2.168±1.13 0.149±0.00 17.503±0.00 1.353±0.00 0.436±0.00
ENSG00000248627 ENST00000502570 N/A N/A N/A 0.423±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.351±0.00
ENSG00000248817 ENST00000508114 0.012±0.00 N/A N/A 0.014±0.00 N/A N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A 0.082±0.05
ENSG00000248984 ENST00000515111 N/A N/A N/A 0.106±0.00 N/A N/A N/A N/A 0.845±0.00 1.468±0.00 N/A N/A N/A N/A
ENSG00000249049 ENST00000502368 N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A N/A N/A 0.176±0.00 N/A 0.089±0.00
ENSG00000249152 ENST00000502518 N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000249239 ENST00000510601 0.064±0.00 0.067±0.00 N/A 0.541±0.00 0.017±0.00 N/A N/A 0.033±0.00 N/A 0.015±0.00 0.014±0.00 0.018±0.00 N/A 1.308±0.87
ENSG00000250908 ENST00000505498 N/A N/A N/A 0.172±0.00 N/A N/A 0.059±0.00 N/A N/A N/A N/A 0.214±0.00 N/A 0.213±0.14
ENSG00000251401 ENST00000513074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.530±0.00
ENSG00000251449 ENST00000511780 N/A N/A N/A 0.851±0.00 N/A N/A 0.241±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000252087 ENST00000516278 N/A N/A N/A 0.086±0.00 0.305±0.00 N/A N/A N/A N/A N/A N/A 3.275±3.12 N/A N/A
ENSG00000279013 ENST00000623567 0.083±0.00 0.038±0.00 0.146±0.00 0.455±0.22 0.017±0.00 N/A 0.065±0.02 0.165±0.00 N/A N/A N/A 0.021±0.01 0.015±0.00 0.189±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039578 ENSMUST00000045522 N/A N/A N/A 2.969±1.76 0.249±0.07 N/A 0.085±0.03 N/A 0.025±0.01 N/A 0.054±0.04 N/A N/A 0.060±0.03
ENSMUST00000067307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.148±0.08
ENSMUST00000126214 N/A 0.078±0.03 N/A 2.671±1.54 N/A N/A 0.015±0.00 N/A 0.008±0.01 N/A 0.015±0.00 0.112±0.11 N/A 0.015±0.00
ENSMUST00000131989 0.208±0.05 0.106±0.05 N/A N/A 0.651±0.25 1.297±0.00 0.049±0.01 0.647±0.10 0.018±0.01 0.796±0.00 0.050±0.02 0.657±0.28 N/A 0.087±0.00
ENSMUST00000133478 0.128±0.00 N/A N/A N/A N/A 1.391±0.00 N/A N/A 0.012±0.00 0.693±0.00 N/A 0.249±0.00 N/A N/A
ENSMUST00000134710 0.183±0.00 0.331±0.00 1.167±0.34 N/A 0.308±0.00 N/A 0.134±0.12 1.251±0.31 0.056±0.04 1.709±0.07 0.057±0.04 0.285±0.12 1.194±0.65 0.077±0.06
ENSMUST00000145554 N/A N/A N/A N/A 0.683±0.00 N/A N/A N/A N/A N/A 0.165±0.00 N/A N/A 0.078±0.00
ENSMUST00000147576 N/A 0.399±0.00 N/A N/A N/A N/A N/A N/A 0.061±0.03 N/A 0.210±0.11 1.149±0.00 N/A N/A
ENSMUSG00000071424 ENSMUST00000095852 N/A 0.089±0.04 0.080±0.02 1.870±0.63 0.017±0.00 0.051±0.02 0.025±0.00 0.011±0.00 0.003±0.00 0.026±0.01 0.015±0.00 0.014±0.01 0.005±0.00 0.031±0.01
ENSMUST00000159319 N/A N/A N/A N/A 0.053±0.03 0.036±0.02 N/A N/A N/A 0.012±0.00 N/A N/A N/A 0.024±0.00
ENSMUST00000159561 N/A 0.154±0.00 N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A 0.007±0.00 0.005±0.00 0.002±0.00 N/A
ENSMUST00000160408 N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A N/A 0.082±0.00 N/A N/A N/A 0.030±0.01
ENSMUST00000161105 N/A 0.338±0.00 N/A N/A N/A N/A N/A 0.011±0.00 N/A 0.042±0.00 N/A N/A N/A N/A
ENSMUST00000162968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.00 N/A N/A N/A
ENSMUSG00000097924 ENSMUST00000180421 0.152±0.10 0.204±0.11 N/A 1.137±0.80 0.364±0.25 3.206±0.63 0.081±0.00 0.524±0.32 0.026±0.02 1.418±0.19 0.024±0.01 0.595±0.41 0.337±0.13 0.055±0.02
ENSMUST00000181288 N/A N/A N/A 0.229±0.00 0.154±0.00 N/A 0.060±0.00 0.059±0.01 0.023±0.01 N/A 0.046±0.02 0.093±0.00 0.215±0.11 0.072±0.03

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