C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000KN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138722-ENSG00000184305 CGP 9606 4:89879532-91601913
GeneTranscriptPositionBiotype
ENSG00000138722 (MMRN1)
multimerin 1 		ENST00000264790 (MMRN1-201) 89894901-89954627 protein_coding
ENST00000394980 (MMRN1-001) 89879532-89954629 protein_coding
ENST00000506328 (MMRN1-006) 89951445-89953455 retained_intron
ENST00000508372 (MMRN1-003) 89901983-89953455 protein_coding
ENSG00000184305 (CCSER1)
coiled-coil serine-rich protein 1 		ENST00000432775 (CCSER1-002) 90235031-90782004 protein_coding
ENST00000502478 (CCSER1-008) 90628021-90642471 nonsense_mediated_decay
ENST00000503421 (CCSER1-011) 90649511-90911313 protein_coding
ENST00000504150 (CCSER1-010) 90649508-90780771 processed_transcript
ENST00000505073 (CCSER1-003) 90127535-90923530 nonsense_mediated_decay
ENST00000508086 (CCSER1-007) 90313013-90468622 retained_intron
ENST00000508550 (CCSER1-005) 90309492-90404131 nonsense_mediated_decay
ENST00000509109 (CCSER1-004) 90649520-91130040 nonsense_mediated_decay
ENST00000509176 (CCSER1-001) 90127585-91601913 protein_coding
ENST00000510519 (CCSER1-012) 90649520-90780568 nonsense_mediated_decay
ENST00000513522 (CCSER1-009) 90628025-90938832 nonsense_mediated_decay
ENST00000514352 (CCSER1-006) 90312960-90468448 retained_intron
ENST00000515693 (CCSER1-013) 90815813-90951312 processed_transcript
ENSG00000187653 (TMSB4XP8)
thymosin beta 4, X-linked pseudogene 8 		ENST00000402089 (TMSB4XP8-001) 90838903-90839037 processed_pseudogene
ENSG00000248984 (AC004054.1)
 ENST00000515111 (AC004054.1-001) 91108023-91112790 antisense
ENSG00000249049 (RP11-763F8.1)
 ENST00000502368 (RP11-763F8.1-001) 91319034-91325306 antisense
ENSG00000251401 (RP11-11N6.1)
 ENST00000513074 (RP11-11N6.1-001) 90682996-90683123 processed_pseudogene
ENSG00000252087 (RN7SKP248)
RNA, 7SK small nuclear pseudogene 248 		ENST00000516278 (RN7SKP248-201) 90370123-90370427 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0000KN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000054641-ENSMUSG00000039578 CGP 10090 6:60924976-62382865
GeneTranscriptPositionBiotype
ENSMUSG00000039578 (Ccser1)
coiled-coil serine rich 1 		ENSMUST00000045522 (Ccser1-201) 61310855-62380267 protein_coding
ENSMUST00000067307 (Ccser1-002) 61373997-61811718 protein_coding
ENSMUST00000126214 (Ccser1-001) 61180324-62382865 protein_coding
ENSMUST00000131989 (Ccser1-003) 61180538-61312608 retained_intron
ENSMUST00000133478 (Ccser1-004) 61180537-61312977 retained_intron
ENSMUST00000134710 (Ccser1-005) 61570670-61820586 protein_coding
ENSMUST00000145554 (Ccser1-007) 61374005-61718385 retained_intron
ENSMUST00000147576 (Ccser1-006) 61313801-61571006 retained_intron
ENSMUSG00000054641 (Mmrn1)
multimerin 1 		ENSMUST00000129603 (Mmrn1-001) 60944476-60989378 protein_coding
ENSMUST00000145763 (Mmrn1-002) 60924976-60946118 retained_intron
ENSMUSG00000097924 (A730020E08Rik)
RIKEN cDNA A730020E08 gene 		ENSMUST00000180421 (A730020E08Rik-201) 61175613-61180270 lincRNA
ENSMUST00000181288 (A730020E08Rik-202) 61176021-61180810 lincRNA

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KN_0001ENSG00000138722ENST00000264790ENST00000394980ENST00000506328ENST00000508372ENSG00000184305ENST00000432775ENST00000502478ENST00000503421ENST00000504150ENST00000505073ENST00000508086ENST00000508550ENST00000509109ENST00000509176ENST00000510519ENST00000513522ENST00000514352ENST00000515693ENSG00000187653ENST00000402089ENSG00000248984ENST00000515111ENSG00000249049ENST00000502368ENSG00000251401ENST00000513074ENSG00000252087ENST00000516278CIL_0000KN_0002ENSMUSG00000039578ENSMUST00000045522ENSMUST00000067307ENSMUST00000126214ENSMUST00000131989ENSMUST00000133478ENSMUST00000134710ENSMUST00000145554ENSMUST00000147576ENSMUSG00000054641ENSMUST00000129603ENSMUST00000145763ENSMUSG00000097924ENSMUST00000180421ENSMUST00000181288
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000KN_0001ENSG00000138722ENST00000264790ENST00000394980ENST00000506328ENST00000508372ENSG00000184305ENST00000432775ENST00000504150ENST00000505073ENST00000508550ENST00000509176ENST00000513522ENST00000514352ENSG00000187653ENST00000402089ENSG00000248984ENST00000515111ENSG00000249049ENST00000502368ENSG00000251401ENST00000513074ENSG00000252087ENST00000516278CIL_0000KN_0002ENSMUSG00000039578ENSMUST00000045522ENSMUST00000067307ENSMUST00000126214ENSMUST00000131989ENSMUST00000133478ENSMUST00000134710ENSMUST00000145554ENSMUST00000147576ENSMUSG00000054641ENSMUST00000129603ENSMUST00000145763ENSMUSG00000097924ENSMUST00000180421ENSMUST00000181288
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138722 ENST00000264790 4.206±0.00 26.913±0.00 0.166±0.00 0.155±0.09 N/A 4.079±2.37 0.708±0.53 0.811±0.02 3.456±0.04 5.340±0.28 0.812±0.55 1.154±0.66 10.584±6.49 4.407±0.00
ENST00000394980 N/A N/A N/A N/A 1.871±0.00 0.560±0.00 0.116±0.00 N/A 2.281±0.00 N/A N/A 0.623±0.23 N/A N/A
ENST00000506328 N/A N/A 0.373±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508372 N/A N/A N/A 0.136±0.02 1.074±0.00 0.660±0.00 N/A N/A N/A 1.410±0.00 N/A N/A N/A 2.879±0.00
ENSG00000184305 ENST00000432775 N/A N/A N/A N/A 0.569±0.00 N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A 0.506±0.00
ENST00000502478 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.071±0.00
ENST00000505073 N/A N/A N/A N/A N/A N/A N/A 0.121±0.00 N/A N/A 0.025±0.00 N/A 0.171±0.00 0.503±0.09
ENST00000508086 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508550 N/A N/A N/A N/A N/A 0.431±0.00 N/A N/A 0.015±0.00 N/A N/A 0.935±0.00 N/A N/A
ENST00000509109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509176 0.226±0.00 0.038±0.00 N/A 0.699±0.19 0.275±0.20 0.142±0.00 0.146±0.00 0.262±0.00 0.227±0.00 N/A 0.017±0.00 0.107±0.00 0.043±0.02 0.434±0.15
ENST00000510519 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513522 N/A N/A N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A 0.194±0.00 N/A
ENST00000514352 N/A N/A N/A N/A 0.231±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187653 ENST00000402089 1.227±0.00 1.529±0.00 13.858±0.00 0.168±0.00 0.515±0.00 3.616±2.65 N/A 1.763±0.00 3.449±2.98 2.168±1.13 0.149±0.00 17.503±0.00 1.353±0.00 0.436±0.00
ENSG00000248984 ENST00000515111 N/A N/A N/A 0.106±0.00 N/A N/A N/A N/A 0.845±0.00 1.468±0.00 N/A N/A N/A N/A
ENSG00000249049 ENST00000502368 N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A N/A N/A 0.176±0.00 N/A 0.089±0.00
ENSG00000251401 ENST00000513074 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.530±0.00
ENSG00000252087 ENST00000516278 N/A N/A N/A 0.086±0.00 0.305±0.00 N/A N/A N/A N/A N/A N/A 3.275±3.12 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039578 ENSMUST00000045522 N/A N/A N/A 2.969±1.76 0.249±0.07 N/A 0.085±0.03 N/A 0.025±0.01 N/A 0.054±0.04 N/A N/A 0.060±0.03
ENSMUST00000067307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.148±0.08
ENSMUST00000126214 N/A 0.078±0.03 N/A 2.671±1.54 N/A N/A 0.015±0.00 N/A 0.008±0.01 N/A 0.015±0.00 0.112±0.11 N/A 0.015±0.00
ENSMUST00000131989 0.208±0.05 0.106±0.05 N/A N/A 0.651±0.25 1.297±0.00 0.049±0.01 0.647±0.10 0.018±0.01 0.796±0.00 0.050±0.02 0.657±0.28 N/A 0.087±0.00
ENSMUST00000133478 0.128±0.00 N/A N/A N/A N/A 1.391±0.00 N/A N/A 0.012±0.00 0.693±0.00 N/A 0.249±0.00 N/A N/A
ENSMUST00000134710 0.183±0.00 0.331±0.00 1.167±0.34 N/A 0.308±0.00 N/A 0.134±0.12 1.251±0.31 0.056±0.04 1.709±0.07 0.057±0.04 0.285±0.12 1.194±0.65 0.077±0.06
ENSMUST00000145554 N/A N/A N/A N/A 0.683±0.00 N/A N/A N/A N/A N/A 0.165±0.00 N/A N/A 0.078±0.00
ENSMUST00000147576 N/A 0.399±0.00 N/A N/A N/A N/A N/A N/A 0.061±0.03 N/A 0.210±0.11 1.149±0.00 N/A N/A
ENSMUSG00000054641 ENSMUST00000129603 2.337±1.99 0.144±0.07 3.770±0.35 0.923±0.21 1.470±0.23 3.854±0.70 1.278±0.20 0.611±0.11 1.343±1.28 3.386±0.12 0.202±0.05 5.724±1.30 0.743±0.68 0.112±0.04
ENSMUST00000145763 N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000097924 ENSMUST00000180421 0.152±0.10 0.204±0.11 N/A 1.137±0.80 0.364±0.25 3.206±0.63 0.081±0.00 0.524±0.32 0.026±0.02 1.418±0.19 0.024±0.01 0.595±0.41 0.337±0.13 0.055±0.02
ENSMUST00000181288 N/A N/A N/A 0.229±0.00 0.154±0.00 N/A 0.060±0.00 0.059±0.01 0.023±0.01 N/A 0.046±0.02 0.093±0.00 0.215±0.11 0.072±0.03

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