C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: coiled-coil serine rich 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039578 Ccser1 10090 + 6:61180324-62382865 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045522 Ccser1-201 61310855-62380267 protein_coding
  ENSMUST00000067307 Ccser1-002 61373997-61811718 protein_coding
  ENSMUST00000126214 Ccser1-001 61180324-62382865 protein_coding
  ENSMUST00000131989 Ccser1-003 61180538-61312608 retained_intron
  ENSMUST00000133478 Ccser1-004 61180537-61312977 retained_intron
  ENSMUST00000134710 Ccser1-005 61570670-61820586 protein_coding
  ENSMUST00000145554 Ccser1-007 61374005-61718385 retained_intron
  ENSMUST00000147576 Ccser1-006 61313801-61571006 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045522ENSMUST00000067307ENSMUST00000126214ENSMUST00000131989ENSMUST00000133478ENSMUST00000134710ENSMUST00000145554ENSMUST00000147576
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045522 N/A N/A N/A 2.969±1.76 0.249±0.07 N/A 0.085±0.03 N/A 0.025±0.01 N/A 0.054±0.04 N/A N/A 0.060±0.03
ENSMUST00000067307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.148±0.08
ENSMUST00000126214 N/A 0.078±0.03 N/A 2.671±1.54 N/A N/A 0.015±0.00 N/A 0.008±0.01 N/A 0.015±0.00 0.112±0.11 N/A 0.015±0.00
ENSMUST00000131989 0.208±0.05 0.106±0.05 N/A N/A 0.651±0.25 1.297±0.00 0.049±0.01 0.647±0.10 0.018±0.01 0.796±0.00 0.050±0.02 0.657±0.28 N/A 0.087±0.00
ENSMUST00000133478 0.128±0.00 N/A N/A N/A N/A 1.391±0.00 N/A N/A 0.012±0.00 0.693±0.00 N/A 0.249±0.00 N/A N/A
ENSMUST00000134710 0.183±0.00 0.331±0.00 1.167±0.34 N/A 0.308±0.00 N/A 0.134±0.12 1.251±0.31 0.056±0.04 1.709±0.07 0.057±0.04 0.285±0.12 1.194±0.65 0.077±0.06
ENSMUST00000145554 N/A N/A N/A N/A 0.683±0.00 N/A N/A N/A N/A N/A 0.165±0.00 N/A N/A 0.078±0.00
ENSMUST00000147576 N/A 0.399±0.00 N/A N/A N/A N/A N/A N/A 0.061±0.03 N/A 0.210±0.11 1.149±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083N CIL_00083N_0002 VISTA 6:60741566-61344404
CIL_0000KN CIL_0000KN_0002 CGP 6:60924976-62382865
CIL_0001RV CIL_0001RV_0003 CGP 6:61180324-64668282

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075919 CCSER1 coiled-coil serine-rich protein 1 protein_coding Danio_rerio
ENSG00000184305 CCSER1 coiled-coil serine-rich protein 1 protein_coding Homo_sapiens

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