C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil serine-rich protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000505073 CCSER1-003 ENSG00000184305 9606 + 4:90127535-90923530 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyMusclePlacentaTestisENST00000505073
Transcript ID Kidney Muscle Placenta Testis
ENST00000505073 0.121±0.00 0.025±0.00 0.171±0.00 0.503±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083N CIL_00083N_0001 VISTA 4:89695882-90299902
CIL_0000KN CIL_0000KN_0001 CGP 4:89879532-91601913
CIL_0001RV CIL_0001RV_0002 CGP 4:90127535-93774556

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126214 Ccser1-001 protein_coding Mus_musculus 0 1522
ENSMUST00000045522 Ccser1-201 protein_coding Mus_musculus 0 1493
ENSMUST00000133478 Ccser1-004 retained_intron Mus_musculus 0 1061
ENSMUST00000131989 Ccser1-003 retained_intron Mus_musculus 0 1057
ENSMUST00000147576 Ccser1-006 retained_intron Mus_musculus 0 381
ENSMUST00000067307 Ccser1-002 protein_coding Mus_musculus 0 311
ENSMUST00000145554 Ccser1-007 retained_intron Mus_musculus 0 303
ENSMUST00000134710 Ccser1-005 protein_coding Mus_musculus 0 207

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