C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sarcoglycan, zeta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382080 SGCZ-001 ENSG00000185053 9606 - 8:14089864-15238339 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverOvaryTestisENST00000382080
Transcript ID Adrenal Breast Liver Ovary Testis
ENST00000382080 0.011±0.00 0.021±0.00 0.108±0.10 0.102±0.00 0.123±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000459 CIL_000459_0001 CGP 8:13566843-15238339
CIL_00006V CIL_00006V_0002 CGP 8:14089864-15766649

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0016012 TAS:IEA sarcoglycan complex
GO:0016021 IEA integral component of membrane
GO:0046716 TAS muscle cell cellular homeostasis
GO:0055001 TAS muscle cell development
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118896 Sgcz-001 protein_coding Mus_musculus 0 2497
ENSMUST00000135764 Sgcz-002 nonsense_mediated_decay Mus_musculus 0 1535

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