C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein S23
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000186468 RPS23 9606 - 5:82273358-82278577 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296674 RPS23-001 82273358-82278577 protein_coding
  ENST00000503605 RPS23-003 82276155-82278143 processed_transcript
  ENST00000504293 RPS23-004 82276060-82277951 retained_intron
  ENST00000507980 RPS23-006 82275878-82278354 protein_coding
  ENST00000510019 RPS23-005 82275421-82278396 protein_coding
  ENST00000510210 RPS23-008 82274524-82278341 protein_coding
  ENST00000511844 RPS23-002 82277359-82278355 protein_coding
  ENST00000512493 RPS23-007 82275244-82278351 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296674ENST00000504293ENST00000507980ENST00000510019ENST00000512493
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296674 11.212±0.00 16.413±0.00 6.580±0.00 21.047±1.15 7.746±0.00 19.459±9.05 7.945±1.38 12.882±6.29 20.637±0.00 9.495±0.00 7.628±0.00 9.768±0.00 N/A 9.110±3.11
ENST00000504293 124.928±0.00 N/A N/A N/A 46.697±6.66 28.453±0.00 47.720±35.88 52.204±23.73 89.364±0.00 110.208±93.24 127.440±110.27 334.109±254.08 389.910±106.45 81.354±33.57
ENST00000507980 49.073±0.00 141.819±0.00 N/A 36.784±0.00 79.887±0.00 88.838±0.00 N/A N/A N/A N/A N/A N/A N/A 45.864±0.00
ENST00000510019 49.580±0.00 63.295±0.00 N/A 33.041±0.00 26.113±0.00 95.147±0.00 25.207±0.00 28.733±0.00 20.396±0.00 41.159±0.00 66.580±0.00 132.142±30.60 61.290±14.51 48.921±0.00
ENST00000512493 107.014±0.00 235.133±0.00 44.119±0.00 95.400±29.69 79.093±13.91 263.894±194.56 106.384±69.90 127.014±62.12 149.190±38.02 352.794±280.49 408.576±310.22 574.261±623.32 422.575±228.46 130.794±44.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TK CIL_0005TK_0002 CGP 5:81413021-82276857
CIL_000922 CIL_000922_0001 VISTA 5:81723063-82325864

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003735 IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 IEA:NAS ribosome
GO:0006412 IEA:IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0015935 IEA small ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021838 rps23 ribosomal protein S23 protein_coding Danio_rerio
ENSMUSG00000049517 Rps23 ribosomal protein S23 protein_coding Mus_musculus

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