C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S23
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000512493 RPS23-007 ENSG00000186468 9606 - 5:82275244-82278351 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000512493
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000512493 107.014±0.00 235.133±0.00 44.119±0.00 95.400±29.69 79.093±13.91 263.894±194.56 106.384±69.90 127.014±62.12 149.190±38.02 352.794±280.49 408.576±310.22 574.261±623.32 422.575±228.46 130.794±44.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TK CIL_0005TK_0002 CGP 5:81413021-82276857
CIL_000922 CIL_000922_0001 VISTA 5:81723063-82325864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005622 IEA intracellular
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005840 IEA ribosome
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051955 Rps23-201 protein_coding Mus_musculus 0 484
ENSMUST00000099128 Gm5148-003 protein_coding Mus_musculus 0 484
ENSMUST00000108105 Gm5148-002 protein_coding Mus_musculus 0 484
ENSMUST00000079755 Gm5148-001 protein_coding Mus_musculus 0 484
ENSMUST00000086479 C330021F23Rik-201 protein_coding Mus_musculus 0 473
ENSMUST00000151633 C330021F23Rik-002 protein_coding Mus_musculus 0 473
ENSMUST00000136592 C330021F23Rik-001 protein_coding Mus_musculus 0 473
ENSMUST00000116115 Rps23-ps-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000146939 Rps23-ps2-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000098864 Gm10689-201 processed_pseudogene Mus_musculus 0 449
ENSMUST00000118718 Gm15464-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000165677 Gm8624-002 processed_transcript Mus_musculus 0 435
ENSMUST00000118083 Gm8624-001 transcribed_processed_pseudogene Mus_musculus 0 433
ENSMUST00000168454 Gm9372-201 processed_pseudogene Mus_musculus 0 361

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