C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription elongation factor A (SII), 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521604 TCEA1-002 ENSG00000187735 9606 - 8:53966556-54022529 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000521604
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000521604 24.635±0.00 21.054±0.00 11.094±0.00 9.399±4.56 14.307±2.51 17.685±2.59 4.704±1.75 13.977±3.06 14.402±7.32 12.261±3.33 2.419±0.00 16.147±4.58 16.603±4.51 20.484±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TN CIL_0008TN_0001 VISTA 8:53576629-54178623

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0006281 TAS DNA repair
GO:0006283 TAS transcription-coupled nucleotide-excision repair
GO:0006289 TAS nucleotide-excision repair
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006368 TAS transcription elongation from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0030218 IEA erythrocyte differentiation
GO:0032784 IEA regulation of DNA-templated transcription, elongation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050434 TAS positive regulation of viral transcription

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081551 Tcea1-001 protein_coding Mus_musculus 0 1450
ENSMUST00000165720 Tcea1-002 protein_coding Mus_musculus 0 1351
ENSMUST00000117942 Tcea1-ps1-001 processed_pseudogene Mus_musculus 0 1282
ENSMUST00000120989 Gm15223-001 processed_pseudogene Mus_musculus 0 946
ENSMUST00000117772 Gm12112-001 processed_pseudogene Mus_musculus 0 366
ENSMUST00000155020 Lypla1-005 nonsense_mediated_decay Mus_musculus 0 243

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