C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: focadhesin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188352 FOCAD 9606 + 9:20658309-20995955 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338382 FOCAD-201 20715321-20995955 protein_coding
  ENST00000380249 FOCAD-001 20658309-20995955 protein_coding
  ENST00000603044 FOCAD-012 20927765-20946731 protein_coding
  ENST00000603492 FOCAD-009 20789334-20823049 processed_transcript
  ENST00000603552 FOCAD-010 20881906-20885529 processed_transcript
  ENST00000603610 FOCAD-016 20896971-20912908 processed_transcript
  ENST00000603631 FOCAD-015 20952420-20981461 processed_transcript
  ENST00000603648 FOCAD-003 20820389-20865967 nonsense_mediated_decay
  ENST00000603695 FOCAD-014 20928944-20944717 protein_coding
  ENST00000603844 FOCAD-004 20822993-20863147 processed_transcript
  ENST00000604036 FOCAD-008 20683978-20720421 processed_transcript
  ENST00000604103 FOCAD-007 20726351-20770133 processed_transcript
  ENST00000604254 FOCAD-013 20927802-20948394 protein_coding
  ENST00000604828 FOCAD-005 20873843-20875815 processed_transcript
  ENST00000605031 FOCAD-006 20726286-20770112 processed_transcript
  ENST00000605086 FOCAD-002 20820294-20995948 protein_coding
  ENST00000605852 FOCAD-011 20872807-20907202 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338382ENST00000380249ENST00000605086ENST00000605852
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338382 1.045±0.00 0.308±0.00 4.019±1.35 1.778±0.33 1.885±0.00 1.557±0.03 0.239±0.00 0.787±0.44 1.235±0.03 0.717±0.39 1.254±0.32 1.983±0.00 1.771±1.16
ENST00000380249 N/A 0.806±0.00 N/A 0.335±0.00 1.400±0.00 0.737±0.05 N/A N/A N/A 0.470±0.00 1.280±0.00 0.867±0.00 N/A
ENST00000605086 0.590±0.00 N/A 1.891±0.00 1.448±0.00 1.501±0.00 0.722±0.00 1.669±1.15 0.734±0.00 N/A 0.433±0.00 2.205±0.89 2.584±1.91 2.287±1.14
ENST00000605852 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.161±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UZ CIL_0005UZ_0002 CGP 9:20341665-20995955
CIL_0007D1 CIL_0007D1_0001 CGP 9:20658309-21031636

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005925 IDA focal adhesion
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022020 FOCAD focadhesin protein_coding Danio_rerio
ENSMUSG00000038368 Focad focadhesin protein_coding Mus_musculus

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