C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: focadhesin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380249 FOCAD-001 ENSG00000188352 9606 + 9:20658309-20995955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartMuscleOvaryPlacentaENST00000380249
Transcript ID Adrenal Breast Colon Heart Muscle Ovary Placenta
ENST00000380249 0.806±0.00 0.335±0.00 1.400±0.00 0.737±0.05 0.470±0.00 1.280±0.00 0.867±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UZ CIL_0005UZ_0002 CGP 9:20341665-20995955
CIL_0007D1 CIL_0007D1_0001 CGP 9:20658309-21031636

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005925 IDA focal adhesion
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097992 Focad-001 protein_coding Mus_musculus 0 5435
ENSMUST00000159342 Focad-009 protein_coding Mus_musculus 0 4183
ENSMUST00000107148 Focad-003 retained_intron Mus_musculus 0 2015
ENSMUST00000161058 Focad-008 retained_intron Mus_musculus 0 963
ENSMUST00000107147 Focad-004 protein_coding Mus_musculus 0 686
ENSMUST00000130603 Focad-007 retained_intron Mus_musculus 0 472
ENSMUST00000147527 Focad-005 retained_intron Mus_musculus 0 309
ENSMUST00000132493 Ptplad2-002 protein_coding Mus_musculus 0 272
ENSMUST00000151280 Ptplad2-001 protein_coding Mus_musculus 8e-26 124

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