C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: focadhesin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000605086 FOCAD-002 ENSG00000188352 9606 + 9:20820294-20995948 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000605086
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000605086 0.590±0.00 1.891±0.00 1.448±0.00 1.501±0.00 0.722±0.00 1.669±1.15 0.734±0.00 0.433±0.00 2.205±0.89 2.584±1.91 2.287±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UZ CIL_0005UZ_0002 CGP 9:20341665-20995955
CIL_0007D1 CIL_0007D1_0001 CGP 9:20658309-21031636

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097992 Focad-001 protein_coding Mus_musculus 0 4069
ENSMUST00000159342 Focad-009 protein_coding Mus_musculus 0 4069
ENSMUST00000107148 Focad-003 retained_intron Mus_musculus 0 2015
ENSMUST00000107147 Focad-004 protein_coding Mus_musculus 0 686
ENSMUST00000130603 Focad-007 retained_intron Mus_musculus 0 472
ENSMUST00000132493 Ptplad2-002 protein_coding Mus_musculus 0 272
ENSMUST00000151280 Ptplad2-001 protein_coding Mus_musculus 6e-26 124

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