C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: focadhesin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038368 Focad 10090 + 4:88094629-88411011 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000097992 Focad-001 88094630-88411006 protein_coding
  ENSMUST00000107147 Focad-004 88400565-88411011 protein_coding
  ENSMUST00000107148 Focad-003 88345367-88411009 retained_intron
  ENSMUST00000129967 Focad-002 88094629-88121812 retained_intron
  ENSMUST00000130603 Focad-007 88303137-88326235 retained_intron
  ENSMUST00000144388 Focad-006 88287635-88303630 processed_transcript
  ENSMUST00000147527 Focad-005 88124436-88154720 retained_intron
  ENSMUST00000159342 Focad-009 88121299-88411004 protein_coding
  ENSMUST00000161058 Focad-008 88094645-88183044 retained_intron
  ENSMUST00000162039 Focad-010 88400350-88407219 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097992ENSMUST00000144388ENSMUST00000159342
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097992 5.942±3.25 4.910±0.60 2.449±0.35 3.118±2.22 3.950±0.50 2.201±0.34 2.219±0.81 2.120±0.28 1.842±0.60 2.603±0.95 1.710±0.45 4.973±0.87 1.930±0.49 1.895±0.60
ENSMUST00000144388 N/A N/A N/A 44.442±0.00 N/A N/A N/A N/A N/A N/A N/A 35.558±0.00 19.921±3.93 12.916±0.00
ENSMUST00000159342 N/A N/A N/A 1.795±0.00 N/A 0.664±0.03 N/A N/A 0.521±0.09 N/A 0.404±0.00 2.167±0.00 0.708±0.20 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005UZ CIL_0005UZ_0003 CGP 4:87769925-88411011
CIL_0007D1 CIL_0007D1_0002 CGP 4:88094629-88438928

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005925 ISS focal adhesion
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022020 FOCAD focadhesin protein_coding Danio_rerio
ENSG00000188352 FOCAD focadhesin protein_coding Homo_sapiens

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