C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005UZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000006754-ENSDARG00000022020 CGP 7955 7:19994259-20194243
GeneTranscriptPositionBiotype
ENSDARG00000006754 (mllt3)
myeloid/lymphoid or mixed lineage-leukemia translocation to 3 homolog (Drosophila) 		ENSDART00000021502 (mllt3-201) 19994261-20096062 protein_coding
ENSDART00000053278 (mllt3-202) 19994550-20091706 protein_coding
ENSDART00000113593 (mllt3-001) 19994259-20042205 protein_coding
ENSDART00000142143 (mllt3-003) 19995080-20025552 processed_transcript
ENSDART00000146181 (mllt3-002) 20041678-20042677 processed_transcript
ENSDARG00000022020 (FOCAD)
focadhesin 		ENSDART00000037846 (FOCAD-201) 20098272-20194243 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005UZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171843-ENSG00000188352 CGP 9606 9:20341665-20995955
GeneTranscriptPositionBiotype
ENSG00000171843 (MLLT3)
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 		ENST00000380321 (MLLT3-002) 20346406-20382469 protein_coding
ENST00000380323 (MLLT3-006) 20345077-20382487 processed_transcript
ENST00000380338 (MLLT3-001) 20341665-20622543 protein_coding
ENST00000468513 (MLLT3-004) 20360742-20411962 processed_transcript
ENST00000469261 (MLLT3-007) 20346293-20363569 processed_transcript
ENST00000475957 (MLLT3-008) 20362705-20622440 processed_transcript
ENST00000488705 (MLLT3-005) 20346353-20382471 processed_transcript
ENST00000491137 (MLLT3-003) 20360753-20382452 processed_transcript
ENSG00000188352 (FOCAD)
focadhesin 		ENST00000338382 (FOCAD-201) 20715321-20995955 protein_coding
ENST00000380249 (FOCAD-001) 20658309-20995955 protein_coding
ENST00000603044 (FOCAD-012) 20927765-20946731 protein_coding
ENST00000603492 (FOCAD-009) 20789334-20823049 processed_transcript
ENST00000603552 (FOCAD-010) 20881906-20885529 processed_transcript
ENST00000603610 (FOCAD-016) 20896971-20912908 processed_transcript
ENST00000603631 (FOCAD-015) 20952420-20981461 processed_transcript
ENST00000603648 (FOCAD-003) 20820389-20865967 nonsense_mediated_decay
ENST00000603695 (FOCAD-014) 20928944-20944717 protein_coding
ENST00000603844 (FOCAD-004) 20822993-20863147 processed_transcript
ENST00000604036 (FOCAD-008) 20683978-20720421 processed_transcript
ENST00000604103 (FOCAD-007) 20726351-20770133 processed_transcript
ENST00000604254 (FOCAD-013) 20927802-20948394 protein_coding
ENST00000604828 (FOCAD-005) 20873843-20875815 processed_transcript
ENST00000605031 (FOCAD-006) 20726286-20770112 processed_transcript
ENST00000605086 (FOCAD-002) 20820294-20995948 protein_coding
ENST00000605852 (FOCAD-011) 20872807-20907202 processed_transcript
ENSG00000227071 (FOCAD-AS1)
FOCAD antisense RNA 1 		ENST00000439876 (FOCAD-AS1-001) 20683304-20684688 lincRNA
ENST00000445051 (FOCAD-AS1-002) 20683389-20683938 lincRNA
ENSG00000237088 (RP11-73E6.2)
 ENST00000444895 (RP11-73E6.2-001) 20532552-20533339 processed_pseudogene
ENSG00000252324 (AL163193.1)
 ENST00000516515 (AL163193.1-201) 20576217-20576301 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005UZ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028496-ENSMUSG00000038368 CGP 10090 4:87769925-88411011
GeneTranscriptPositionBiotype
ENSMUSG00000028496 (Mllt3)
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 		ENSMUST00000078090 (Mllt3-001) 87769925-88033364 protein_coding
ENSMUST00000126353 (Mllt3-003) 87772673-87806314 protein_coding
ENSMUST00000128930 (Mllt3-006) 87791853-88033281 processed_transcript
ENSMUST00000134555 (Mllt3-007) 87832781-87874542 processed_transcript
ENSMUST00000141526 (Mllt3-005) 87837419-88032813 retained_intron
ENSMUST00000142454 (Mllt3-004) 87841084-88032813 nonsense_mediated_decay
ENSMUST00000148059 (Mllt3-010) 87773953-87806294 protein_coding
ENSMUST00000149357 (Mllt3-002) 87773916-87806323 protein_coding
ENSMUSG00000028497 (Ptplad2)
protein tyrosine phosphatase-like A domain containing 2 		ENSMUST00000030221 (Ptplad2-201) 88412930-88438926 protein_coding
ENSMUST00000132493 (Ptplad2-002) 88396144-88438915 protein_coding
ENSMUST00000151280 (Ptplad2-001) 88410341-88438928 protein_coding
ENSMUSG00000038368 (Focad)
focadhesin 		ENSMUST00000097992 (Focad-001) 88094630-88411006 protein_coding
ENSMUST00000107147 (Focad-004) 88400565-88411011 protein_coding
ENSMUST00000107148 (Focad-003) 88345367-88411009 retained_intron
ENSMUST00000129967 (Focad-002) 88094629-88121812 retained_intron
ENSMUST00000130603 (Focad-007) 88303137-88326235 retained_intron
ENSMUST00000144388 (Focad-006) 88287635-88303630 processed_transcript
ENSMUST00000147527 (Focad-005) 88124436-88154720 retained_intron
ENSMUST00000159342 (Focad-009) 88121299-88411004 protein_coding
ENSMUST00000161058 (Focad-008) 88094645-88183044 retained_intron
ENSMUST00000162039 (Focad-010) 88400350-88407219 processed_transcript
ENSMUSG00000081818 (Gm12652)
predicted gene 12652 		ENSMUST00000118329 (Gm12652-001) 88255914-88256251 processed_pseudogene
ENSMUSG00000082597 (Gm12645)
predicted gene 12645 		ENSMUST00000117297 (Gm12645-001) 88151696-88151970 processed_pseudogene
ENSMUSG00000084809 (Gm12631)
predicted gene 12631 		ENSMUST00000130576 (Gm12631-001) 88033501-88034998 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005UZ_0001ENSDARG00000006754ENSDART00000021502ENSDART00000053278ENSDART00000113593ENSDART00000142143ENSDART00000146181ENSDARG00000022020ENSDART00000037846CIL_0005UZ_0002ENSG00000171843ENST00000380321ENST00000380323ENST00000380338ENST00000468513ENST00000469261ENST00000475957ENST00000488705ENST00000491137ENSG00000188352ENST00000338382ENST00000380249ENST00000603044ENST00000603492ENST00000603552ENST00000603610ENST00000603631ENST00000603648ENST00000603695ENST00000603844ENST00000604036ENST00000604103ENST00000604254ENST00000604828ENST00000605031ENST00000605086ENST00000605852ENSG00000227071ENST00000439876ENST00000445051ENSG00000237088ENST00000444895ENSG00000252324ENST00000516515CIL_0005UZ_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005UZ_0001ENSDARG00000006754ENSDART00000021502ENSDART00000053278ENSDART00000113593ENSDARG00000022020ENSDART00000037846CIL_0005UZ_0002ENSG00000171843ENST00000380321ENST00000380323ENST00000380338ENST00000475957ENSG00000188352ENST00000338382ENST00000380249ENST00000605086ENST00000605852ENSG00000227071ENST00000439876ENST00000445051ENSG00000237088ENST00000444895ENSG00000252324ENST00000516515CIL_0005UZ_0003ENSMUSG00000028496ENSMUST00000078090ENSMUST00000126353ENSMUST00000128930ENSMUST00000142454ENSMUST00000148059ENSMUST00000149357ENSMUSG00000028497ENSMUST00000030221ENSMUST00000151280ENSMUSG00000038368ENSMUST00000097992ENSMUST00000144388ENSMUST00000159342ENSMUSG00000081818ENSMUST00000118329ENSMUSG00000082597ENSMUST00000117297ENSMUSG00000084809ENSMUST00000130576
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000006754 ENSDART00000021502 N/A N/A N/A 2.253±0.00 N/A N/A N/A 0.359±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000053278 N/A N/A N/A 3.969±1.17 N/A N/A 0.570±0.00 2.171±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000113593 N/A N/A N/A 1.939±0.07 N/A N/A N/A 1.628±0.62 0.041±0.00 N/A 0.287±0.00 N/A N/A N/A
ENSDART00000142143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000146181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000022020 ENSDART00000037846 N/A N/A N/A 0.958±0.09 N/A N/A 1.487±0.00 N/A 0.193±0.00 N/A 0.396±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171843 ENST00000380321 0.997±0.00 N/A N/A 3.634±0.00 N/A 5.179±0.58 1.351±0.09 2.674±0.00 N/A 2.801±0.34 0.560±0.00 3.090±0.40 2.291±0.93 2.266±0.68
ENST00000380323 0.672±0.00 1.361±0.00 N/A 2.209±0.00 1.229±0.05 2.116±0.02 0.647±0.22 0.803±0.62 0.104±0.00 1.004±0.00 N/A 1.727±0.44 1.435±0.33 0.730±0.47
ENST00000380338 0.425±0.00 0.508±0.00 0.866±0.00 1.484±0.52 0.620±0.16 1.054±0.37 0.255±0.02 0.408±0.37 2.019±0.00 0.861±0.34 0.175±0.00 0.795±0.28 0.342±0.08 0.411±0.28
ENST00000468513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469261 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475957 0.393±0.00 N/A 0.636±0.00 N/A N/A N/A N/A N/A N/A N/A 1.134±0.00 N/A N/A 0.582±0.00
ENST00000488705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188352 ENST00000338382 1.045±0.00 0.308±0.00 N/A 4.019±1.35 1.778±0.33 1.885±0.00 1.557±0.03 0.239±0.00 0.787±0.44 1.235±0.03 0.717±0.39 1.254±0.32 1.983±0.00 1.771±1.16
ENST00000380249 N/A 0.806±0.00 N/A N/A 0.335±0.00 1.400±0.00 0.737±0.05 N/A N/A N/A 0.470±0.00 1.280±0.00 0.867±0.00 N/A
ENST00000603044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605086 0.590±0.00 N/A N/A 1.891±0.00 1.448±0.00 1.501±0.00 0.722±0.00 1.669±1.15 0.734±0.00 N/A 0.433±0.00 2.205±0.89 2.584±1.91 2.287±1.14
ENST00000605852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.161±0.00 N/A N/A N/A
ENSG00000227071 ENST00000439876 0.094±0.00 N/A N/A 0.104±0.00 0.050±0.00 0.093±0.00 0.137±0.04 0.204±0.00 N/A N/A N/A 0.049±0.00 0.106±0.00 0.049±0.00
ENST00000445051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.283±0.00 0.352±0.00 N/A
ENSG00000237088 ENST00000444895 N/A 0.104±0.00 0.063±0.00 N/A 0.102±0.00 N/A N/A 0.127±0.00 N/A 0.058±0.02 N/A 0.095±0.01 N/A N/A
ENSG00000252324 ENST00000516515 N/A 1.292±0.00 N/A 0.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.594±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028496 ENSMUST00000078090 1.470±0.57 1.526±0.39 1.333±0.03 6.114±4.37 1.624±0.49 2.118±0.28 0.545±0.08 0.844±0.22 1.471±1.55 1.884±0.26 3.163±0.28 1.944±0.87 0.439±0.07 0.255±0.08
ENSMUST00000126353 2.379±1.20 N/A 2.115±0.12 N/A 6.660±1.69 4.826±0.60 0.921±0.19 1.465±0.15 4.379±4.73 3.829±0.62 8.131±1.39 2.153±0.52 1.410±0.86 N/A
ENSMUST00000128930 N/A N/A N/A N/A 1.950±0.13 2.100±0.12 0.765±0.11 N/A 0.261±0.09 N/A N/A 1.397±0.03 1.627±0.00 1.207±0.17
ENSMUST00000134555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142454 2.079±0.00 1.738±0.64 N/A N/A 2.094±0.22 3.377±0.82 N/A 1.315±0.26 N/A 1.762±0.00 N/A 3.522±1.20 N/A 1.709±1.02
ENSMUST00000148059 N/A N/A N/A 21.491±0.00 N/A N/A N/A N/A N/A N/A N/A 29.585±0.00 24.748±3.35 20.561±0.00
ENSMUST00000149357 N/A N/A N/A 7.508±0.00 5.026±0.59 N/A 1.443±0.31 N/A 27.840±17.79 N/A 29.661±2.56 11.634±0.00 5.559±1.74 3.531±1.03
ENSMUSG00000028497 ENSMUST00000030221 N/A N/A N/A N/A 5.672±1.86 N/A N/A N/A N/A N/A N/A 4.438±0.00 N/A N/A
ENSMUST00000132493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151280 4.086±1.26 N/A 6.540±0.16 1.453±0.57 3.135±0.38 1.954±0.34 1.524±0.07 2.352±0.00 1.579±0.12 3.698±0.00 0.536±0.11 3.105±0.70 1.643±1.33 0.655±0.39
ENSMUSG00000038368 ENSMUST00000097992 5.942±3.25 4.910±0.60 2.449±0.35 3.118±2.22 3.950±0.50 2.201±0.34 2.219±0.81 2.120±0.28 1.842±0.60 2.603±0.95 1.710±0.45 4.973±0.87 1.930±0.49 1.895±0.60
ENSMUST00000107147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144388 N/A N/A N/A 44.442±0.00 N/A N/A N/A N/A N/A N/A N/A 35.558±0.00 19.921±3.93 12.916±0.00
ENSMUST00000147527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159342 N/A N/A N/A 1.795±0.00 N/A 0.664±0.03 N/A N/A 0.521±0.09 N/A 0.404±0.00 2.167±0.00 0.708±0.20 N/A
ENSMUST00000161058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081818 ENSMUST00000118329 0.377±0.00 0.943±0.00 0.069±0.03 0.337±0.21 0.194±0.00 N/A N/A 0.323±0.00 0.168±0.19 0.208±0.00 N/A 1.312±1.49 0.248±0.07 0.180±0.00
ENSMUSG00000082597 ENSMUST00000117297 N/A N/A N/A N/A N/A 0.594±0.00 N/A N/A 0.118±0.02 N/A N/A N/A 0.047±0.00 N/A
ENSMUSG00000084809 ENSMUST00000130576 N/A N/A 0.070±0.00 0.270±0.17 N/A N/A N/A 0.092±0.00 0.069±0.06 N/A 0.116±0.05 0.093±0.07 0.039±0.01 N/A

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