C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007D1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188352-ENSG00000188921 CGP 9606 9:20658309-21031636
GeneTranscriptPositionBiotype
ENSG00000188352 (FOCAD)
focadhesin 		ENST00000338382 (FOCAD-201) 20715321-20995955 protein_coding
ENST00000380249 (FOCAD-001) 20658309-20995955 protein_coding
ENST00000603044 (FOCAD-012) 20927765-20946731 protein_coding
ENST00000603492 (FOCAD-009) 20789334-20823049 processed_transcript
ENST00000603552 (FOCAD-010) 20881906-20885529 processed_transcript
ENST00000603610 (FOCAD-016) 20896971-20912908 processed_transcript
ENST00000603631 (FOCAD-015) 20952420-20981461 processed_transcript
ENST00000603648 (FOCAD-003) 20820389-20865967 nonsense_mediated_decay
ENST00000603695 (FOCAD-014) 20928944-20944717 protein_coding
ENST00000603844 (FOCAD-004) 20822993-20863147 processed_transcript
ENST00000604036 (FOCAD-008) 20683978-20720421 processed_transcript
ENST00000604103 (FOCAD-007) 20726351-20770133 processed_transcript
ENST00000604254 (FOCAD-013) 20927802-20948394 protein_coding
ENST00000604828 (FOCAD-005) 20873843-20875815 processed_transcript
ENST00000605031 (FOCAD-006) 20726286-20770112 processed_transcript
ENST00000605086 (FOCAD-002) 20820294-20995948 protein_coding
ENST00000605852 (FOCAD-011) 20872807-20907202 processed_transcript
ENSG00000188921 (PTPLAD2)
protein tyrosine phosphatase-like A domain containing 2 		ENST00000488436 (PTPLAD2-002) 21015137-21026745 processed_transcript
ENST00000495827 (PTPLAD2-001) 20999515-21031636 protein_coding
ENSG00000227071 (FOCAD-AS1)
FOCAD antisense RNA 1 		ENST00000439876 (FOCAD-AS1-001) 20683304-20684688 lincRNA
ENST00000445051 (FOCAD-AS1-002) 20683389-20683938 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007D1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038368-ENSMUSG00000028497 CGP 10090 4:88094629-88438928
GeneTranscriptPositionBiotype
ENSMUSG00000028497 (Ptplad2)
protein tyrosine phosphatase-like A domain containing 2 		ENSMUST00000030221 (Ptplad2-201) 88412930-88438926 protein_coding
ENSMUST00000132493 (Ptplad2-002) 88396144-88438915 protein_coding
ENSMUST00000151280 (Ptplad2-001) 88410341-88438928 protein_coding
ENSMUSG00000038368 (Focad)
focadhesin 		ENSMUST00000097992 (Focad-001) 88094630-88411006 protein_coding
ENSMUST00000107147 (Focad-004) 88400565-88411011 protein_coding
ENSMUST00000107148 (Focad-003) 88345367-88411009 retained_intron
ENSMUST00000129967 (Focad-002) 88094629-88121812 retained_intron
ENSMUST00000130603 (Focad-007) 88303137-88326235 retained_intron
ENSMUST00000144388 (Focad-006) 88287635-88303630 processed_transcript
ENSMUST00000147527 (Focad-005) 88124436-88154720 retained_intron
ENSMUST00000159342 (Focad-009) 88121299-88411004 protein_coding
ENSMUST00000161058 (Focad-008) 88094645-88183044 retained_intron
ENSMUST00000162039 (Focad-010) 88400350-88407219 processed_transcript
ENSMUSG00000081818 (Gm12652)
predicted gene 12652 		ENSMUST00000118329 (Gm12652-001) 88255914-88256251 processed_pseudogene
ENSMUSG00000082597 (Gm12645)
predicted gene 12645 		ENSMUST00000117297 (Gm12645-001) 88151696-88151970 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007D1_0001ENSG00000188352ENST00000338382ENST00000380249ENST00000603044ENST00000603492ENST00000603552ENST00000603610ENST00000603631ENST00000603648ENST00000603695ENST00000603844ENST00000604036ENST00000604103ENST00000604254ENST00000604828ENST00000605031ENST00000605086ENST00000605852ENSG00000188921ENST00000488436ENST00000495827ENSG00000227071ENST00000439876ENST00000445051CIL_0007D1_0002ENSMUSG00000028497ENSMUST00000030221ENSMUST00000132493ENSMUST00000151280ENSMUSG00000038368ENSMUST00000097992ENSMUST00000107147ENSMUST00000107148ENSMUST00000129967ENSMUST00000130603ENSMUST00000144388ENSMUST00000147527ENSMUST00000159342ENSMUST00000161058ENSMUST00000162039ENSMUSG00000081818ENSMUST00000118329ENSMUSG00000082597ENSMUST00000117297
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007D1_0001ENSG00000188352ENST00000338382ENST00000380249ENST00000605086ENST00000605852ENSG00000188921ENST00000488436ENST00000495827ENSG00000227071ENST00000439876ENST00000445051CIL_0007D1_0002ENSMUSG00000028497ENSMUST00000030221ENSMUST00000151280ENSMUSG00000038368ENSMUST00000097992ENSMUST00000144388ENSMUST00000159342ENSMUSG00000081818ENSMUST00000118329ENSMUSG00000082597ENSMUST00000117297
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000188352 ENST00000338382 1.045±0.00 0.308±0.00 N/A 4.019±1.35 1.778±0.33 1.885±0.00 1.557±0.03 0.239±0.00 0.787±0.44 1.235±0.03 0.717±0.39 1.254±0.32 1.983±0.00 1.771±1.16
ENST00000380249 N/A 0.806±0.00 N/A N/A 0.335±0.00 1.400±0.00 0.737±0.05 N/A N/A N/A 0.470±0.00 1.280±0.00 0.867±0.00 N/A
ENST00000603044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000603844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000604828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000605086 0.590±0.00 N/A N/A 1.891±0.00 1.448±0.00 1.501±0.00 0.722±0.00 1.669±1.15 0.734±0.00 N/A 0.433±0.00 2.205±0.89 2.584±1.91 2.287±1.14
ENST00000605852 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.161±0.00 N/A N/A N/A
ENSG00000188921 ENST00000488436 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.118±0.00 N/A N/A N/A
ENST00000495827 0.351±0.00 0.335±0.00 0.333±0.00 0.298±0.17 0.492±0.00 1.182±0.42 0.237±0.01 0.242±0.12 0.735±0.62 1.793±0.16 0.088±0.00 0.818±0.45 1.281±0.32 0.573±0.23
ENSG00000227071 ENST00000439876 0.094±0.00 N/A N/A 0.104±0.00 0.050±0.00 0.093±0.00 0.137±0.04 0.204±0.00 N/A N/A N/A 0.049±0.00 0.106±0.00 0.049±0.00
ENST00000445051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.283±0.00 0.352±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028497 ENSMUST00000030221 N/A N/A N/A N/A 5.672±1.86 N/A N/A N/A N/A N/A N/A 4.438±0.00 N/A N/A
ENSMUST00000132493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151280 4.086±1.26 N/A 6.540±0.16 1.453±0.57 3.135±0.38 1.954±0.34 1.524±0.07 2.352±0.00 1.579±0.12 3.698±0.00 0.536±0.11 3.105±0.70 1.643±1.33 0.655±0.39
ENSMUSG00000038368 ENSMUST00000097992 5.942±3.25 4.910±0.60 2.449±0.35 3.118±2.22 3.950±0.50 2.201±0.34 2.219±0.81 2.120±0.28 1.842±0.60 2.603±0.95 1.710±0.45 4.973±0.87 1.930±0.49 1.895±0.60
ENSMUST00000107147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107148 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129967 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144388 N/A N/A N/A 44.442±0.00 N/A N/A N/A N/A N/A N/A N/A 35.558±0.00 19.921±3.93 12.916±0.00
ENSMUST00000147527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159342 N/A N/A N/A 1.795±0.00 N/A 0.664±0.03 N/A N/A 0.521±0.09 N/A 0.404±0.00 2.167±0.00 0.708±0.20 N/A
ENSMUST00000161058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081818 ENSMUST00000118329 0.377±0.00 0.943±0.00 0.069±0.03 0.337±0.21 0.194±0.00 N/A N/A 0.323±0.00 0.168±0.19 0.208±0.00 N/A 1.312±1.49 0.248±0.07 0.180±0.00
ENSMUSG00000082597 ENSMUST00000117297 N/A N/A N/A N/A N/A 0.594±0.00 N/A N/A 0.118±0.02 N/A N/A N/A 0.047±0.00 N/A

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