C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small ubiquitin-like modifier 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000188612 SUMO2 9606 - 17:75165586-75182983 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314523 SUMO2-002 75167868-75182956 protein_coding
  ENST00000420826 SUMO2-001 75165586-75182983 protein_coding
  ENST00000578238 SUMO2-003 75168298-75182563 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314523ENST00000420826ENST00000578238
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314523 69.209±0.00 75.925±0.00 N/A 32.947±15.18 69.370±0.00 92.289±0.00 3.432±0.00 36.020±27.38 29.835±0.00 116.448±0.00 27.174±23.42 60.203±48.07 66.537±6.04 115.259±0.00
ENST00000420826 5.373±0.00 8.024±0.00 5.550±0.00 8.142±0.42 5.550±0.71 6.659±3.33 3.322±0.00 7.663±0.77 6.097±2.00 11.617±4.91 4.280±1.79 20.148±12.25 12.814±0.00 15.347±0.00
ENST00000578238 56.443±0.00 68.870±0.00 26.849±0.00 44.572±0.00 38.392±18.58 51.569±29.01 5.923±0.00 45.254±0.00 25.926±0.02 14.747±0.00 30.148±14.05 111.458±26.09 N/A 103.544±19.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0001 VISTA 17:75051738-75652852
CIL_0001JI CIL_0001JI_0001 CGP 17:75130225-75168281
CIL_0001HE CIL_0001HE_0001 CGP 17:75135248-75182983
CIL_0007IA CIL_0007IA_0001 CGP 17:75165586-75235758

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0016605 IDA PML body
GO:0016925 IDA protein sumoylation
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032436 IDA positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046062 sumo2b SMT3 suppressor of mif two 3 homolog 2b protein_coding Danio_rerio
ENSMUSG00000020738 Sumo2 SMT3 suppressor of mif two 3 homolog 2 (yeast) protein_coding Mus_musculus

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