C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SMT3 suppressor of mif two 3 homolog 2 (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020738 Sumo2 10090 - 11:115523102-115536276 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021084 Sumo2-002 115523102-115536229 nonsense_mediated_decay
  ENSMUST00000050672 Sumo2-005 115534379-115536189 retained_intron
  ENSMUST00000117589 Sumo2-004 115523102-115535817 protein_coding
  ENSMUST00000118155 Sumo2-007 115523102-115536181 protein_coding
  ENSMUST00000121185 Sumo2-003 115523102-115535817 protein_coding
  ENSMUST00000140844 Sumo2-006 115529949-115536176 retained_intron
  ENSMUST00000153892 Sumo2-001 115523102-115536276 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050672ENSMUST00000117589ENSMUST00000121185ENSMUST00000153892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050672 N/A N/A N/A 228.031±0.00 N/A N/A N/A N/A N/A N/A N/A 301.252±0.00 317.966±140.37 121.878±0.00
ENSMUST00000117589 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.612±0.00
ENSMUST00000121185 N/A N/A N/A N/A 37.109±0.00 N/A N/A N/A N/A N/A N/A 132.834±4.98 39.939±12.44 N/A
ENSMUST00000153892 42.589±5.26 29.018±3.09 128.655±8.82 223.571±149.36 27.883±9.89 25.255±0.74 36.862±2.29 40.085±7.90 93.732±80.39 47.506±3.77 67.009±2.72 28.085±7.09 93.710±63.26 30.643±15.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0001HE CIL_0001HE_0002 CGP 11:115497353-115536276
CIL_0007IA CIL_0007IA_0002 CGP 11:115523102-115583985

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0016605 ISS PML body
GO:0016925 IDA protein sumoylation
GO:0019789 IDA SUMO ligase activity
GO:0031625 ISS ubiquitin protein ligase binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000046062 sumo2b SMT3 suppressor of mif two 3 homolog 2b protein_coding Danio_rerio
ENSG00000177688 SUMO4 small ubiquitin-like modifier 4 protein_coding Homo_sapiens
ENSG00000188612 SUMO2 small ubiquitin-like modifier 2 protein_coding Homo_sapiens

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